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Download EndnoteCrystal Structures of the Substrate-Free and the Product-Bound forms of HmuO, a Heme Oxygenase from Corynebacterium diphtheriae
Unno, M., Ardevol, A., Rovira, C., Ikeda-Saito, M.To be published.
4GPH
Structure of HmuO, heme oxygenase from Corynebacterium diphtheriae, in complex with the putative reaction intermediates between Fe3+-biliverdin and biliverdin (data set IV)
- DOI: 10.2210/pdb4GPH/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Corynebacterium diphtheriae
- Expression System: Escherichia coli
- Deposited: 2012-08-21 Released: 2013-08-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.205
- R-Value Work: 0.165
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Heme oxygenase | A, B, C | 215 | Corynebacterium diphtheriae | Mutation(s): 0 |
Find proteins for Q54AI1 (Corynebacterium diphtheriae) Go to UniProtKB: Q54AI1 | ||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A, B, C | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| ASC Query on ASC | C | ASCORBIC ACID C6 H8 O6 CIWBSHSKHKDKBQ-JLAZNSOCSA-N |  | Ligand Interaction | |
| FE Query on FE | A, C | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | Ligand Interaction | |
| BLA Query on BLA | A, B, C | BILIVERDINE IX ALPHA C33 H34 N4 O6 GWZYPXHJIZCRAJ-SRVCBVSDSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.205
- R-Value Work: 0.165
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 54.065 | α = 90.00 |
| b = 62.966 | β = 100.78 |
| c = 107.728 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| HKL-2000 | data scaling |
| REFMAC | refinement |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Deposited Date: 2012-08-21
- Released Date: 2013-08-21
- Deposition Author(s): Unno, M., Ikeda-Saito, M.
