Download MendeleyPTPN18-HER2 peptides
Wang, H.M., Yang, F., Du, Y.J., Yang, D.X., Zhang, Y., Yu, X., Sun, J.P.To be published.
4GFU
PTPN18 in complex with HER2-pY1248 phosphor-peptides
- PDB DOI: https://doi.org/10.2210/pdb4GFU/pdb
- Classification: HYDROLASE/Peptide
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2012-08-04 Released: 2013-08-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.232
- R-Value Work: 0.189
- R-Value Observed: 0.192
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tyrosine-protein phosphatase non-receptor type 18 | A | 297 | Homo sapiens | Mutation(s): 1 Gene Names: PTPN18, BDP1 EC: 3.1.3.48 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q99952 (Homo sapiens) Explore Q99952 Go to UniProtKB: Q99952 | |||||
PHAROS: Q99952 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q99952 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HER2-pY1248 phosphor-peptide | B [auth F] | 7 | Homo sapiens | Mutation(s): 0 Gene Names: ERBB2, HER2, MLN19, NEU, NGL EC: 2.7.10.1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04626 (Homo sapiens) Explore P04626 Go to UniProtKB: P04626 | |||||
PHAROS: P04626 | |||||
Entity Groups | |||||
| UniProt Group | P04626 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| PTR Query on PTR | B [auth F] | L-PEPTIDE LINKING | C9 H12 N O6 P |  | TYR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.232
- R-Value Work: 0.189
- R-Value Observed: 0.192
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.032 | α = 90 |
| b = 71.766 | β = 99.52 |
| c = 57.161 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2013-08-07 Deposition Author(s): Wang, H.M., Yang, F., Du, Y.J., Yang, D.X., Zhang, Y., Yu, X., Sun, J.P.
Revision History (Full details and data files)
- Version 1.0: 2013-08-07
Type: Initial release
