4GF6

crystal structure of GFP with cuprum bound at the Incorporated metal Chelating Amino Acid PYZ151


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Genetic incorporation of a metal-chelating amino Acid as a probe for protein electron transfer.

Liu, X.Li, J.Dong, J.Hu, C.Gong, W.Wang, J.

(2012) Angew.Chem.Int.Ed.Engl. 51: 10261-10265


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
green fluorescent protein
B
246Aequorea victoriaMutation(s): 3 
Gene Names: GFP
Find proteins for P42212 (Aequorea victoria)
Go to UniProtKB:  P42212
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
CU
Query on CU

Download SDF File 
Download CCD File 
B
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
0WZ
Query on 0WZ
B
L-PEPTIDE LINKINGC12 H13 N3 O3TYR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.166 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 50.827α = 90.00
b = 63.052β = 90.00
c = 70.369γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
CNSphasing
HKL-2000data collection
HKL-2000data scaling
REFMACrefinement
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-08-29
    Type: Initial release
  • Version 1.1: 2012-10-24
    Type: Database references