4FTE

Crystal structure of the D75N mutant capsid of Flock House virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Work: 0.239 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides

Speir, J.A.Chen, Z.Reddy, V.S.Johnson, J.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Capsid protein alpha
A, B, C
407Flock house virusMutation(s): 1 
Gene Names: alpha
Find proteins for P12870 (Flock house virus)
Go to UniProtKB:  P12870
Entity ID: 2
MoleculeChainsLengthOrganism
Random cellular RNAsR15Spodoptera frugiperda
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EPE
Query on EPE

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A, B, C
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

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Download CCD File 
B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A, B, C
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Work: 0.239 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 325.600α = 90.00
b = 325.600β = 90.00
c = 770.660γ = 120.00
Software Package:
Software NamePurpose
CNSrefinement
GLRFphasing
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-08-01
    Type: Initial release