Crystal structure of the cdk2 in complex with oxindole inhibitor
Kang, Y.N., Stuckey, J.A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cyclin-dependent kinase 2 | A | 299 | Homo sapiens | Mutation(s): 1  Gene Names: CDK2, CDKN2 EC: 2.7.11.22 | ![]() |
Find proteins for P24941 (Homo sapiens) Explore P24941  Go to UniProtKB:  P24941 | |||||
NIH Common Fund Data Resources | |||||
PHAROS:  P24941 GTEx:  ENSG00000123374 | |||||
Protein Feature ViewExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
61K Query on 61K | A | (3Z)-N-[2-(1H-imidazol-4-yl)ethyl]-2-oxo-3-[2-(4-sulfamoylphenyl)hydrazinylidene]-2,3-dihydro-1H-indole-5-carboxamide C20 H19 N7 O4 S CQSUILWVYSOEJC-UHFFFAOYSA-N | Ligand Interaction | ||
GOL Query on GOL | A | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | Ligand Interaction |
External Ligand Annotations  | |
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ID | Binding Affinity (Sequence Identity %) |
61K | ΔG:  39   kJ/mol  BindingDB |
61K | -TΔS:  6.289999961853027   kJ/mol  BindingDB |
61K | Kd:  82.19999694824219   nM  BindingDB |
61K | ΔH:  18   kJ/mol  BindingDB |
61K | Kd:  251   nM  BindingDB |
61K | ΔH:  44.79999923706055   kJ/mol  BindingDB |
61K | ΔG:  40.400001525878906   kJ/mol  BindingDB |
61K | -TΔS:  22.350000381469727   kJ/mol  BindingDB |
Length ( Å ) | Angle ( ˚ ) |
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a = 53.657 | α = 90 |
b = 71.914 | β = 90 |
c = 72.096 | γ = 90 |
Software Name | Purpose |
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MD2 | data collection |
PHASER | phasing |
BUSTER | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |