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Download EndnoteCrystal structure of the cdk2 in complex with oxindole inhibitor
Kang, Y.N., Stuckey, J.A.To be published.
4FKQ
Crystal structure of the cdk2 in complex with oxindole inhibitor
- DOI: 10.2210/pdb4FKQ/pdb
- Classification: TRANSFERASE/TRANSFERASE INHIBITOR
- Organism(s): Homo sapiens
- Expression System: Trichoplusia ni
- Deposited: 2012-06-13 Released: 2013-05-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.195
- R-Value Work: 0.176
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 42K Query on 42K | A | 4-[(2Z)-2-(7-oxidanylidene-3,6-dihydropyrrolo[3,2-e]benzotriazol-8-ylidene)hydrazinyl]benzenesulfonamide C14 H11 N7 O3 S AQAPFJBZSZVEGI-UHFFFAOYSA-N |  | Ligand Interaction | |
| GOL Query on GOL | A | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| ACE Query on ACE | A | NON-POLYMER | C2 H4 O |  | -- |
| External Ligand Annotations | |
|---|---|
| ID | Binding Affinity (Sequence Identity %) |
| 42K | Kd: 191 - 528 nM (100) BINDINGDB |
| 42K | ΔG: -35.8 - -38.2 kJ/mol (100) BINDINGDB |
| 42K | ΔH: -27.5 - -30.3 kJ/mol (100) BINDINGDB |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.195
- R-Value Work: 0.176
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 53.361 | α = 90.00 |
| b = 72.112 | β = 90.00 |
| c = 72.402 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| PHASER | phasing |
| HKL-2000 | data reduction |
| MD2 | data collection |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2012-06-13
- Released Date: 2013-05-08
- Deposition Author(s): Kang, Y.N., Stuckey, J.A.
