Crystal structure of the cdk2 in complex with oxindole inhibitor
Kang, Y.N., Stuckey, J.A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cyclin-dependent kinase 2 | A | 299 | Homo sapiens | Mutation(s): 1  Gene Names: CDK2, CDKN2 EC: 2.7.11.22 | ![]() |
Find proteins for P24941 (Homo sapiens) Explore P24941  Go to UniProtKB:  P24941 | |||||
NIH Common Fund Data Resources | |||||
PHAROS:  P24941 GTEx:  ENSG00000123374 | |||||
Protein Feature ViewExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
42K Query on 42K | A | 4-[(2Z)-2-(7-oxidanylidene-3,6-dihydropyrrolo[3,2-e]benzotriazol-8-ylidene)hydrazinyl]benzenesulfonamide C14 H11 N7 O3 S AQAPFJBZSZVEGI-UHFFFAOYSA-N | Ligand Interaction | ||
GOL Query on GOL | A | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | Ligand Interaction |
External Ligand Annotations  | |
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ID | Binding Affinity (Sequence Identity %) |
42K | ΔH:  27.5   kJ/mol  BindingDB |
42K | Kd:  528   nM  BindingDB |
42K | ΔH:  30.299999237060547   kJ/mol  BindingDB |
42K | ΔG:  38.20000076293945   kJ/mol  BindingDB |
42K | Kd:  191   nM  BindingDB |
42K | ΔG:  35.84000015258789   kJ/mol  BindingDB |
42K | -TΔS:  7.78000020980835   kJ/mol  BindingDB |
42K | -TΔS:  8.34000015258789   kJ/mol  BindingDB |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 53.361 | α = 90 |
b = 72.112 | β = 90 |
c = 72.402 | γ = 90 |
Software Name | Purpose |
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MD2 | data collection |
PHASER | phasing |
BUSTER | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |