4ETA

Lysozyme, room temperature, 400 kGy dose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.180 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

High-resolution protein structure determination by serial femtosecond crystallography.

Boutet, S.Lomb, L.Williams, G.J.Barends, T.R.Aquila, A.Doak, R.B.Weierstall, U.DePonte, D.P.Steinbrener, J.Shoeman, R.L.Messerschmidt, M.Barty, A.White, T.A.Kassemeyer, S.Kirian, R.A.Seibert, M.M.Montanez, P.A.Kenney, C.Herbst, R.Hart, P.Pines, J.Haller, G.Gruner, S.M.Philipp, H.T.Tate, M.W.Hromalik, M.Koerner, L.J.van Bakel, N.Morse, J.Ghonsalves, W.Arnlund, D.Bogan, M.J.Caleman, C.Fromme, R.Hampton, C.Y.Hunter, M.S.Johansson, L.C.Katona, G.Kupitz, C.Liang, M.Martin, A.V.Nass, K.Redecke, L.Stellato, F.Timneanu, N.Wang, D.Zatsepin, N.A.Schafer, D.Defever, J.Neutze, R.Fromme, P.Spence, J.C.Chapman, H.N.Schlichting, I.

(2012) Science 337: 362-364

  • DOI: 10.1126/science.1217737
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Structure determination of proteins and other macromolecules has historically required the growth of high-quality crystals sufficiently large to diffract x-rays efficiently while withstanding radiation damage. We applied serial femtosecond crystallog ...

    Structure determination of proteins and other macromolecules has historically required the growth of high-quality crystals sufficiently large to diffract x-rays efficiently while withstanding radiation damage. We applied serial femtosecond crystallography (SFX) using an x-ray free-electron laser (XFEL) to obtain high-resolution structural information from microcrystals (less than 1 micrometer by 1 micrometer by 3 micrometers) of the well-characterized model protein lysozyme. The agreement with synchrotron data demonstrates the immediate relevance of SFX for analyzing the structure of the large group of difficult-to-crystallize molecules.


    Organizational Affiliation

    Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA. sboutet@slac.stanford.edu




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysozyme C
A
129Gallus gallusMutation(s): 0 
Gene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to Gene View: LYZ
Go to UniProtKB:  P00698
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.180 
  • R-Value Work: 0.160 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 79.300α = 90.00
b = 79.300β = 90.00
c = 38.200γ = 90.00
Software Package:
Software NamePurpose
PHENIXmodel building
PHENIXrefinement
XDSdata reduction
PHENIXphasing
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History