4DYU

The crystal structure of DNA starvation/stationary phase protection protein Dps from Yersinia pestis KIM 10


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.179 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The crystal structure of DNA starvation/stationary phase protection protein Dps from Yersinia pestis KIM 10

Tan, K.Gu, M.Kwon, K.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA protection during starvation protein
A, B, C, D, E, F, G, H, I, J, K, L
170Yersinia pestisMutation(s): 0 
Gene Names: dps
EC: 1.16.-.-
Find proteins for Q7CJ65 (Yersinia pestis)
Go to UniProtKB:  Q7CJ65
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D, E, F, H, I, J, K, L
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, D, E, F, G, H, J, K
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 105.414α = 90.00
b = 105.102β = 90.00
c = 191.834γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
HKL-3000data scaling
PHENIXrefinement
SBC-Collectdata collection
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-03-14
    Type: Initial release