4DYU

The crystal structure of DNA starvation/stationary phase protection protein Dps from Yersinia pestis KIM 10


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The crystal structure of DNA starvation/stationary phase protection protein Dps from Yersinia pestis KIM 10

Tan, K.Gu, M.Kwon, K.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DNA protection during starvation protein
A, B, C, D, E, F, G, H, I, J, K, L
A, B, C, D, E, F, G, H, I, J, K, L
170Yersinia pestis KIM10+Mutation(s): 0 
Gene Names: dpsy1677Yersinia pestisYPO2510YP_2325
EC: 1.16
UniProt
Find proteins for Q7CJ65 (Yersinia pestis)
Explore Q7CJ65 
Go to UniProtKB:  Q7CJ65
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7CJ65
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth F],
BA [auth G],
DA [auth H],
GA [auth J],
HA [auth J],
AA [auth F],
BA [auth G],
DA [auth H],
GA [auth J],
HA [auth J],
JA [auth K],
N [auth A],
O [auth A],
Q [auth B],
R [auth B],
U [auth D],
V [auth D],
Y [auth E]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
CA [auth H],
EA [auth I],
FA [auth J],
IA [auth K],
KA [auth L],
CA [auth H],
EA [auth I],
FA [auth J],
IA [auth K],
KA [auth L],
M [auth A],
P [auth B],
S [auth C],
T [auth D],
W [auth E],
X [auth E],
Z [auth F]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 105.414α = 90
b = 105.102β = 90
c = 191.834γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
MOLREPphasing
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-03-14
    Type: Initial release