4CAI

Structure of inner DysF domain of human dysferlin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structures of the Human Dysferlin Inner Dysf Domain

Sula, A.Cole, A.R.Yeats, C.Orengo, C.Keep, N.H.

(2014) Bmc Struct.Biol. 14: 3

  • DOI: 10.1186/1472-6807-14-3
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Mutations in dysferlin, the first protein linked with the cell membrane repair mechanism, causes a group of muscular dystrophies called dysferlinopathies. Dysferlin is a type two-anchored membrane protein, with a single C terminal trans-membrane heli ...

    Mutations in dysferlin, the first protein linked with the cell membrane repair mechanism, causes a group of muscular dystrophies called dysferlinopathies. Dysferlin is a type two-anchored membrane protein, with a single C terminal trans-membrane helix, and most of the protein lying in cytoplasm. Dysferlin contains several C2 domains and two DysF domains which are nested one inside the other. Many pathogenic point mutations fall in the DysF domain region.


    Related Citations: 
    • Solution Structure of the Inner Dysf Domain of Myoferlin and Implications for Limb Girdle Muscular Dystrophy Type 2B.
      Patel, P.,Harris, R.,Geddes, S.M.,Strehle, E.,Watson, J.D.,Bashir, R.,Bushby, K.,Driscoll, P.C.,Keep, N.H.
      (2008) J.Mol.Biol. 379: 981


    Organizational Affiliation

    Crystallography, Biological Sciences, Institute for Structural and Molecular Biology, Birkbeck University of London, Malet Street, London WC1E 7HX, UK. n.keep@mail.cryst.bbk.ac.uk.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DYSFERLIN
A, B, C
112Homo sapiensMutation(s): 0 
Gene Names: DYSF (FER1L1)
Find proteins for O75923 (Homo sapiens)
Go to Gene View: DYSF
Go to UniProtKB:  O75923
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B, C
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.186 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 79.894α = 90.00
b = 77.473β = 90.00
c = 74.504γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHASERphasing
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-01-29
    Type: Initial release