Download MendeleyStructure of Cdk2 in Complex with a Benzimidazopyrimidine
Rye, C.To be published.
4BZD
Structure of CDK2 in complex with a benzimidazopyrimidine
- PDB DOI: 10.2210/pdb4BZD/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2013-07-25 Released: 2014-08-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.83 Å
- R-Value Free: 0.204
- R-Value Work: 0.173
- R-Value Observed: 0.175
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CYCLIN-DEPENDENT KINASE 2 | A | 299 | Homo sapiens | Mutation(s): 0 Gene Names: CDK2, CDKN2 EC: 2.7.11.22 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P24941 (Homo sapiens) Explore P24941 Go to UniProtKB: P24941 | |||||
PHAROS: P24941 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P24941 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| D6I Query on D6I | C [auth A] | 6-(benzimidazol-1-yl)-N-[5-[3-(dimethylamino)propoxy]pyridin-2-yl]pyrimidin-4-amine C21 H23 N7 O VKUXBRRQHBTQPW-UHFFFAOYSA-N |  | Ligand Interaction | |
| ACT Query on ACT | B [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.83 Å
- R-Value Free: 0.204
- R-Value Work: 0.173
- R-Value Observed: 0.175
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.456 | α = 90 |
| b = 71.884 | β = 90 |
| c = 72.291 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2014-08-13 Deposition Author(s): Tucker, J.A., Valentine, A., Stanway, J., Brassington, C.
Revision History (Full details and data files)
- Version 1.0: 2014-08-13
Type: Initial release - Version 1.1: 2018-04-04
Changes: Data collection - Version 1.2: 2019-04-24
Changes: Data collection, Source and taxonomy
