4BLX

CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS OSTREATUS - CRYSTAL FORM IV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.249 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Ligninolytic Peroxidase Genes in the Oyster Mushroom Genome: Heterologous Expression, Molecular Structure, Catalytic and Stability Properties, and Lignin-Degrading Ability.

Fernandez-Fueyo, E.Ruiz-Duenas, F.J.Martinez, M.J.Romero, A.Hammel, K.E.Medrano, F.J.Martinez, A.T.

(2014) Biotechnol.Biofuels 7: 2

  • DOI: 10.1186/1754-6834-7-2
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The genome of Pleurotus ostreatus, an important edible mushroom and a model ligninolytic organism of interest in lignocellulose biorefineries due to its ability to delignify agricultural wastes, was sequenced with the purpose of identifying and chara ...

    The genome of Pleurotus ostreatus, an important edible mushroom and a model ligninolytic organism of interest in lignocellulose biorefineries due to its ability to delignify agricultural wastes, was sequenced with the purpose of identifying and characterizing the enzymes responsible for lignin degradation.


    Organizational Affiliation

    Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas (CSIC), Ramiro de Maeztu 9, E-28040 Madrid, Spain. kehammel@facstaff.wisc.edu.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VERSATILE PEROXIDASE I
A
332Pleurotus eryngiiMutation(s): 0 
Gene Names: vpl1
EC: 1.11.1.16
Find proteins for Q9UR19 (Pleurotus eryngii)
Go to UniProtKB:  Q9UR19
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
HEM
Query on HEM

Download SDF File 
Download CCD File 
A
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.249 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.160 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 94.670α = 90.00
b = 94.670β = 90.00
c = 38.460γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
XDSdata reduction
PHENIXrefinement
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-01-15
    Type: Initial release