4BL7

Crystal structure of the AIMP3-MRS N-terminal domain complex in different space group

• PDB DOI: https://doi.org/10.2210/pdb4BL7/pdb

• Classification: TRANSLATION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2013-05-02 Released: 2014-05-21 
• Deposition Author(s): Cho, H.Y., Seo, W.W., Cho, H.J., Kang, B.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.89 Å
• R-Value Free: 0.229 
• R-Value Work: 0.180 
• R-Value Observed: 0.184 

Starting Model: experimental

Literature

Crystal Structure of the Aimp3-Mrs N-Terminal Domain Complex in Different Space Group

Cho, H.Y., Seo, W.W., Cho, H.J., Kang, B.S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 Pseudo Symmetry: Cyclic - C2  (Explore in 3D)
Pseudo Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 47.11 kDa 
• Atom Count: 3,116 
• Modelled Residue Count: 375 
• Deposited Residue Count: 418 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
METHIONINE--TRNA LIGASE, CYTOPLASMIC	A	232	Homo sapiens	Mutation(s): 0  EC: 6.1.1.10
UniProt & NIH Common Fund Data Resources
Find proteins for P56192 (Homo sapiens) Explore P56192  Go to UniProtKB:  P56192
PHAROS:  P56192 GTEx:  ENSG00000166986

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1	B	186	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for O43324 (Homo sapiens) Explore O43324  Go to UniProtKB:  O43324
PHAROS:  O43324 GTEx:  ENSG00000124802

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.89 Å
• R-Value Free: 0.229 
• R-Value Work: 0.180 
• R-Value Observed: 0.184 
• Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.685	α = 90
b = 72.029	β = 90
c = 123.417	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-05-21 
Deposition Author(s): Cho, H.Y., Seo, W.W., Cho, H.J., Kang, B.S.

Revision History  

• Version 1.0: 2014-05-21
  Type: Initial release
  
• Version 1.1: 2023-12-20
  Changes: Data collection, Database references, Other, Refinement description