4AE2

Crystal structure of Human fibrillar procollagen type III C- propeptide trimer

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history. 


Literature

Structural Basis of Fibrillar Collagen Trimerization and Related Genetic Disorders.

Bourhis, J.M., Mariano, N., Zhao, Y., Harlos, K., Exposito, J.Y., Jones, E.Y., Moali, C., Aghajari, N., Hulmes, D.J.

(2012) Nat Struct Mol Biol 19: 1031

  • DOI: 10.1038/nsmb.2389
  • Structures With Same Primary Citation

  • PubMed Abstract: 

    • The C propeptides of fibrillar procollagens have crucial roles in tissue growth and repair by controlling both the intracellular assembly of procollagen molecules and the extracellular assembly of collagen fibrils. Mutations in C propeptides are asso ...

    The C propeptides of fibrillar procollagens have crucial roles in tissue growth and repair by controlling both the intracellular assembly of procollagen molecules and the extracellular assembly of collagen fibrils. Mutations in C propeptides are associated with several, often lethal, genetic disorders affecting bone, cartilage, blood vessels and skin. Here we report the crystal structure of a C-propeptide domain from human procollagen III. It reveals an exquisite structural mechanism of chain recognition during intracellular trimerization of the procollagen molecule. It also gives insights into why some types of collagen consist of three identical polypeptide chains, whereas others do not. Finally, the data show striking correlations between the sites of numerous disease-related mutations in different C-propeptide domains and the degree of phenotype severity. The results have broad implications for understanding genetic disorders of connective tissues and designing new therapeutic strategies.

    Related Citations: 
    • Production and Crystallization of the C-Propeptide Trimer from Human Procollagen III.
      Bourhis, J.M., Mariano, N., Zhao, Y., Walter, T.S., El Omari, K., Delolme, F., Moali, C., Hulmes, D.J., Aghajari, N.
      (2012) Acta Crystallogr Sect F Struct Biol Cryst Commun 68: 1209
    Organizational Affiliation: 

    Formation de Recherche en Evolution 3310, Institut de Biologie et Chimie des Protéines, Centre National de la Recherche Scientifique, Université Lyon 1, Lyon, France.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
COLLAGEN ALPHA-1(III) CHAIN
A, B, C
256Homo sapiensMutation(s): 2 
Gene Names: COL3A1
Find proteins for P02461 (Homo sapiens)
Go to UniProtKB:  P02461
NIH Common Fund Data Resources
PHAROS  P02461
GTEx  ENSG00000168542
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NO3
Query on NO3
Download CCD File 
A, B, C
NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N		 Ligand Interaction
CA
Query on CA
Download CCD File 
A, B, C
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.164 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 76.45α = 90
b = 90.36β = 90
c = 102.44γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing

Structure Validation

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View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-09-12
    Type: Initial release
  • Version 1.1: 2012-10-17
    Changes: Database references, Structure summary
  • Version 1.2: 2012-10-31
    Changes: Database references
  • Version 1.3: 2019-04-03
    Changes: Data collection, Other, Source and taxonomy