Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 51205.77 
• Atom Count: 3458 
• Residue Count: 440 
• Unique protein chains: 1

4A3O

Crystal structure of the USP15 DUSP-UBL monomer

• DOI: 10.2210/pdb4A3O/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21


• Deposited: 2011-10-03 Released: 2011-11-16 
• Deposition Author(s): Elliott, P.R., Liu, H., Pastok, M.W., Grossmann, G.J., Rigden, D.J., Clague, M.J., Urbe, S., Barsukov, I.L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.2 Å
• R-Value Free: 0.229 
• R-Value Work: 0.201 

Literature

Structural Variability of the Ubiquitin Specific Protease Dusp-Ubl Double Domains.

Elliott, P.R., Liu, H., Pastok, M.W., Grossmann, G.J., Rigden, D.J., Clague, M.J., Urbe, S., Barsukov, I.L.

(2011) FEBS Lett. 585: 3385

• PubMed: 22001210 
• DOI: 10.1016/j.febslet.2011.09.040
• Primary Citation of Related Structures:  
  4A3P, 3PV1


• PubMed Abstract: 
  

USP4, 11 and 15 are three closely related paralogues of the ubiquitin specific protease (USP) family of deubiquitinating enzymes. The DUSP domain and the UBL domain in these proteins are juxtaposed which may provide a functional unit conferring specificity. We determined the structures of the USP15 DUSP-UBL double domain unit in monomeric and dimeric states. We then conducted comparative analysis of the structural and physical properties of all three DUSP-UBL units. We identified structural features that dictate different dispositions between constituent domains, which in turn may influence respective binding properties.

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Organizational Affiliation: 

The University of Liverpool, Institute of Integrative Biology, Biosciences Building, Crown Street, Liverpool L69 7ZB, United Kingdom. [e-mail]

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15	A, B	220	Homo sapiens	Mutation(s): 0  Gene Names: USP15 (KIAA0529) EC: 3.4.19.12
Find proteins for Q9Y4E8 (Homo sapiens) Go to Gene View: USP15 Go to UniProtKB:  Q9Y4E8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
GOL	A, B	GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.2 Å
• R-Value Free: 0.229 
• R-Value Work: 0.201 
• Space Group: P 3₁

Unit Cell:

Length (Å)	Angle (°)
a = 100.419	α = 90.00
b = 100.419	β = 90.00
c = 71.704	γ = 120.00

Software Package:

Software Name	Purpose
SCALA	data scaling
MOSFLM	data reduction
PHASER	phasing
PHENIX	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2011-10-03 
• Released Date: 2011-11-16 
• Deposition Author(s): Elliott, P.R., Liu, H., Pastok, M.W., Grossmann, G.J., Rigden, D.J., Clague, M.J., Urbe, S., Barsukov, I.L.

Revision History 

• Version 1.0: 2011-11-16
  Type: Initial release