4A3O

Crystal structure of the USP15 DUSP-UBL monomer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural Variability of the Ubiquitin Specific Protease Dusp-Ubl Double Domains.

Elliott, P.R.Liu, H.Pastok, M.W.Grossmann, G.J.Rigden, D.J.Clague, M.J.Urbe, S.Barsukov, I.L.

(2011) FEBS Lett. 585: 3385

  • DOI: 10.1016/j.febslet.2011.09.040
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • USP4, 11 and 15 are three closely related paralogues of the ubiquitin specific protease (USP) family of deubiquitinating enzymes. The DUSP domain and the UBL domain in these proteins are juxtaposed which may provide a functional unit conferring speci ...

    USP4, 11 and 15 are three closely related paralogues of the ubiquitin specific protease (USP) family of deubiquitinating enzymes. The DUSP domain and the UBL domain in these proteins are juxtaposed which may provide a functional unit conferring specificity. We determined the structures of the USP15 DUSP-UBL double domain unit in monomeric and dimeric states. We then conducted comparative analysis of the structural and physical properties of all three DUSP-UBL units. We identified structural features that dictate different dispositions between constituent domains, which in turn may influence respective binding properties.


    Organizational Affiliation

    The University of Liverpool, Institute of Integrative Biology, Biosciences Building, Crown Street, Liverpool L69 7ZB, United Kingdom. P.R.Elliott@liv.ac.uk




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15
A, B
220Homo sapiensMutation(s): 0 
Gene Names: USP15 (KIAA0529)
EC: 3.4.19.12
Find proteins for Q9Y4E8 (Homo sapiens)
Go to Gene View: USP15
Go to UniProtKB:  Q9Y4E8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.201 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 100.419α = 90.00
b = 100.419β = 90.00
c = 71.704γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
MOSFLMdata reduction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-11-16
    Type: Initial release