Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

 3D View: Structure | Electron Density | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 52.46 kDa 
• Atom Count: 3154 
• Residue Count: 318 
• Unique protein chains: 1
• Unique nucleic acid chains: 2

3VEK

Both Zn Fingers of GATA1 Bound to Palindromic DNA Recognition Site, P1 Crystal Form

• DOI: 10.2210/pdb3VEK/pdb
• NDB: NA1549

• Classification: TRANSCRIPTION/DNA
• Organism(s): Mus musculus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-01-09 Released: 2013-01-16 
• Deposition Author(s): Jacques, D.A., Ripin, N., Wilkinson-White, L.E., Guss, J.M., Matthews, J.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.63 Å
• R-Value Free: 0.275 
• R-Value Work: 0.235 
• R-Value Observed: 0.237 

Literature

DNA recognition by GATA1 double finger

Wilkinson-White, L.E., Ripin, N., Jacques, D.A., Guss, J.M., Matthews, J.M.

To be published.

Macromolecules

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Erythroid transcription factor	C, F	119	Mus musculus	Mutation(s): 0  Gene Names: Gata1, Gf-1
Find proteins for P17679 (Mus musculus) Explore P17679  Go to UniProtKB:  P17679

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*TP*TP*GP*TP*CP*TP*TP*AP*TP*CP*AP*GP*AP*TP*GP*GP*AP*CP*TP*C)-3')	A, D	20	N/A

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*AP*AP*GP*AP*GP*TP*CP*CP*AP*TP*CP*TP*GP*AP*TP*AP*AP*GP*AP*C)-3')	B, E	20	N/A

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	A, B, C, D, E, F	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.63 Å
• R-Value Free: 0.275 
• R-Value Work: 0.235 
• R-Value Observed: 0.237 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 35.195	α = 72.39
b = 62.415	β = 74.57
c = 66.046	γ = 73.63

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345dtb	data collection
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2012-01-09 
• Released Date: 2013-01-16 
Deposition Author(s): Jacques, D.A., Ripin, N., Wilkinson-White, L.E., Guss, J.M., Matthews, J.M.

Revision History 

• Version 1.0: 2013-01-16
  Type: Initial release