3VEK | pdb_00003vek

Both Zn Fingers of GATA1 Bound to Palindromic DNA Recognition Site, P1 Crystal Form

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8033981	3000068	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8033981	3000068	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	GATA	e3vekC5	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: GATA	ECOD (1.6)
F	GATA	e3vekF3	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: GATA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1	Chain A	CATH (4.3.0)
F	3.30.50.10	Alpha Beta	2-Layer Sandwich	Erythroid Transcription Factor GATA-1	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, F	PF00320	GATA zinc finger (GATA)	GATA zinc finger	This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D	DNA (5'-D(TPTPGPTPCPTPTPAPTPCPAPGPAPTPGPGPAPCPTPC)-3')	-	-	-
B, E	DNA (5'-D(APAPGPAPGPTPCPCPAPTPCPTPGPAPTPAPAPGPAPC)-3')	-	-	-
C, F	Erythroid transcription factor	transcription factor binding transcription coregulator binding protein binding binding sequence-specific DNA binding DNA binding nucleic acid binding C2H2 zinc finger domain binding protein domain specific binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription factor binding transcription coregulator binding protein binding binding sequence-specific DNA binding DNA binding nucleic acid binding C2H2 zinc finger domain binding protein domain specific binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity p53 binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding RNA polymerase II transcription regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding transcription coactivator binding chromatin DNA binding DNA binding, bending cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	multicellular organismal process regulation of cellular process cellular developmental process regulation of developmental process homeostatic process cell development regulation of cell differentiation regulation of cell development multicellular organism development cell differentiation anatomical structure development regulation of immune system process regulation of multicellular organismal process myeloid cell homeostasis multicellular organismal process regulation of cellular process cellular developmental process regulation of developmental process homeostatic process cell development regulation of cell differentiation regulation of cell development multicellular organism development cell differentiation anatomical structure development regulation of immune system process regulation of multicellular organismal process myeloid cell homeostasis erythrocyte homeostasis developmental process regulation of biological process regulation of multicellular organismal development definitive hemopoiesis hemopoiesis regulation of myeloid cell differentiation biological regulation regulation of definitive erythrocyte differentiation erythrocyte differentiation definitive erythrocyte differentiation regulation of erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process regulation of hemopoiesis homeostasis of number of cells cellular process myeloid leukocyte differentiation eosinophil fate commitment eosinophil differentiation granulocyte differentiation cell fate commitment leukocyte differentiation ossification bone mineralization animal organ development biomineral tissue development tissue development homeostasis of number of cells within a tissue anatomical structure homeostasis tissue homeostasis erythrocyte development myeloid cell development primitive hemopoiesis embryo development embryonic organ development embryonic hemopoiesis primitive erythrocyte differentiation establishment of organelle localization regulation of immune effector process regulation of localization regulated exocytosis regulation of myeloid leukocyte mediated immunity response to stimulus cell activation involved in immune response leukocyte degranulation myeloid leukocyte activation myeloid leukocyte mediated immunity vesicle-mediated transport localization positive regulation of leukocyte degranulation positive regulation of regulated secretory pathway establishment of localization in cell leukocyte mediated immunity positive regulation of mast cell degranulation positive regulation of immune system process immune response vacuolar localization mast cell degranulation establishment of localization immune effector process regulation of secretion regulation of leukocyte mediated immunity exocytosis lysosome localization cellular localization transport positive regulation of biological process positive regulation of secretion by cell positive regulation of exocytosis regulation of mast cell degranulation leukocyte activation regulation of regulated secretory pathway secretion by cell regulation of secretion by cell positive regulation of secretion organelle localization leukocyte activation involved in immune response mast cell activation positive regulation of immune effector process regulation of leukocyte degranulation positive regulation of cellular process mast cell mediated immunity secretion regulation of transport cell activation export from cell regulation of vesicle-mediated transport myeloid cell activation involved in immune response mast cell activation involved in immune response positive regulation of transport regulation of exocytosis cell population proliferation signaling cell-cell signaling cell communication regulation of body fluid levels wound healing homotypic cell-cell adhesion hemostasis platelet aggregation blood coagulation cell adhesion cell-cell adhesion response to stress coagulation regulation of biological quality response to wounding platelet activation embryo development ending in birth or egg hatching chordate embryonic development in utero embryonic development positive regulation of cell population proliferation positive regulation of osteoblast proliferation osteoblast proliferation regulation of cell population proliferation regulation of osteoblast proliferation positive regulation of developmental process positive regulation of cell differentiation positive regulation of erythrocyte differentiation positive regulation of myeloid cell differentiation cellular response to stimulus cellular response to gonadotropin stimulus response to endogenous stimulus response to gonadotropin cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone cellular response to follicle-stimulating hormone stimulus response to chemical response to follicle-stimulating hormone cellular response to hormone stimulus carbohydrate derivative biosynthetic process regulation of biosynthetic process regulation of protein metabolic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process regulation of macromolecule metabolic process glycoprotein metabolic process macromolecule biosynthetic process regulation of glycoprotein metabolic process regulation of primary metabolic process biosynthetic process metabolic process regulation of macromolecule biosynthetic process protein metabolic process macromolecule metabolic process regulation of metabolic process regulation of glycoprotein biosynthetic process myeloid cell apoptotic process apoptotic process cell death programmed cell death dendritic cell differentiation mononuclear cell differentiation reproductive process sex differentiation developmental process involved in reproduction epithelial cell differentiation Sertoli cell differentiation male gonad development male sex differentiation development of primary male sexual characteristics development of primary sexual characteristics reproductive structure development system development epithelium development gonad development reproductive system development Sertoli cell development epithelial cell development negative regulation of biological process RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process nucleobase-containing compound biosynthetic process gene expression nucleic acid metabolic process regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process positive regulation of cytosolic calcium ion concentration negative regulation of extrinsic apoptotic signaling pathway in absence of ligand signal transduction in absence of ligand negative regulation of signaling regulation of signal transduction regulation of programmed cell death negative regulation of cell communication extrinsic apoptotic signaling pathway negative regulation of signal transduction in absence of ligand negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand signal transduction regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway negative regulation of apoptotic process regulation of response to stimulus regulation of extrinsic apoptotic signaling pathway in absence of ligand regulation of cell communication regulation of apoptotic signaling pathway biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin cellular response to nitrogen compound response to organophosphorus response to nitrogen compound response to purine-containing compound response to cAMP cellular response to cAMP megakaryocyte differentiation negative regulation of myeloid cell apoptotic process regulation of myeloid cell apoptotic process platelet morphogenesis cell morphogenesis anatomical structure morphogenesis platelet formation anatomical structure formation involved in morphogenesis negative regulation of cell population proliferation animal organ regeneration regeneration basophil differentiation negative regulation of biomineral tissue development regulation of biomineral tissue development regulation of bone mineralization negative regulation of bone mineralization negative regulation of developmental process negative regulation of ossification negative regulation of multicellular organismal process regulation of ossification regulation of primitive erythrocyte differentiation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex transcription regulator complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex transcription regulator complex transcription repressor complex protein-DNA complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F	IPR000679	Zinc finger, GATA-type	Domain
C, F	IPR013088	Zinc finger, NHR/GATA-type	Homologous Superfamily
C, F	IPR039355	Transcription factor GATA	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.