EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++

Experimental Data Snapshot

  • Resolution: 2.32 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.192 

wwPDB Validation   3D Report Full Report

This is version 1.5 of the entry. See complete history


EAL domain from Caulobacter crescentus in complex with 5'-pGpG and Mg++

Filippova, E.V.Minasov, G.Shuvalova, L.Kiryukhina, O.Massa, C.Schirmer, T.Joachimiak, A.Anderson, W.F.Midwest Center for Structural Genomics (MCSG)

To be published.


Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
GGDEF family protein
A, B
261Caulobacter vibrioides CB15Mutation(s): 0 
Gene Names: CC_3396
Find proteins for Q9A310 (Caulobacter vibrioides (strain ATCC 19089 / CB15))
Explore Q9A310 
Go to UniProtKB:  Q9A310
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9A310
Sequence Annotations
  • Reference Sequence

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (5'-R(P*GP*G)-3')
C, D
Sequence Annotations
  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62.144α = 90
b = 75.154β = 90
c = 129.066γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2011-10-12
    Type: Initial release
  • Version 1.1: 2016-08-31
    Changes: Structure summary
  • Version 1.2: 2016-10-12
    Changes: Structure summary
  • Version 1.3: 2017-11-08
    Changes: Refinement description
  • Version 1.4: 2023-09-13
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.5: 2023-12-06
    Changes: Data collection