3U2E

EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

EAL domain from Caulobacter crescentus in complex with 5'-pGpG and Mg++

Filippova, E.V.Minasov, G.Shuvalova, L.Kiryukhina, O.Massa, C.Schirmer, T.Joachimiak, A.Anderson, W.F.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
GGDEF family protein
A, B
261Caulobacter vibrioides (strain ATCC 19089 / CB15)Mutation(s): 0 
Find proteins for Q9A310 (Caulobacter vibrioides (strain ATCC 19089 / CB15))
Go to UniProtKB:  Q9A310
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(P*GP*G)-3')C,D2N/A
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C, D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 62.144α = 90.00
b = 75.154β = 90.00
c = 129.066γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
HKL-3000data reduction
Blu-Icedata collection
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-10-12
    Type: Initial release
  • Version 1.1: 2016-08-31
    Type: Structure summary
  • Version 1.2: 2016-10-12
    Type: Structure summary
  • Version 1.3: 2017-11-08
    Type: Refinement description