3R72 | pdb_00003r72

Apis mellifera odorant binding protein 5

• PDB DOI: https://doi.org/10.2210/pdb3R72/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Apis mellifera
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2011-03-22 Released: 2012-04-04 
• Deposition Author(s): Spinelli, S., Iovinella, I., Lagarde, A., Tegoni, M., Pelosi, P., Cambillau, C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.15 Å
• R-Value Free: 
  0.173 (Depositor), 0.170 (DCC) 
• R-Value Work: 
  0.152 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.153 (Depositor) 

Literature

Crystal structure of Apis mellifera odorant binding protein 5

Spinelli, S., Iovinella, I., Lagarde, A., Tegoni, M., Pelosi, P., Cambillau, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 14.76 kDa 
• Atom Count: 1,321 
• Modeled Residue Count: 122 
• Deposited Residue Count: 122 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Odorant binding protein ASP5	A	122	Apis mellifera	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NBB	B [auth A], C [auth A]	N-BUTYL-BENZENESULFONAMIDE C10 H15 N O2 S IPRJXAGUEGOFGG-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.15 Å
• R-Value Free:  0.173 (Depositor), 0.170 (DCC) 
• R-Value Work:  0.152 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.153 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.695	α = 90
b = 45.239	β = 90
c = 70.882	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
REFMAC	refinement
XDS	data reduction
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-04-04 
Deposition Author(s): Spinelli, S., Iovinella, I., Lagarde, A., Tegoni, M., Pelosi, P., Cambillau, C.

Revision History  

• Version 1.0: 2012-04-04
  Type: Initial release
  
• Version 1.1: 2018-01-24
  Changes: Database references, Structure summary
• Version 1.2: 2024-10-16
  Changes: Data collection, Database references, Derived calculations, Structure summary