3R72

Apis mellifera odorant binding protein 5

PDB DOI: https://doi.org/10.2210/pdb3R72/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Apis mellifera
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-03-22 Released: 2012-04-04
Deposition Author(s): Spinelli, S., Iovinella, I., Lagarde, A., Tegoni, M., Pelosi, P., Cambillau, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.15 Å
R-Value Free: 0.173
R-Value Work: 0.152
R-Value Observed: 0.153

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Apis mellifera odorant binding protein 5

Spinelli, S., Iovinella, I., Lagarde, A., Tegoni, M., Pelosi, P., Cambillau, C.

To be published.

Macromolecule Content

Total Structure Weight: 14.76 kDa
Atom Count: 1,321
Modelled Residue Count: 122
Deposited Residue Count: 122
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Odorant binding protein ASP5	A	122	Apis mellifera	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NBB Query on NBB Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A]	B [auth A], C [auth A]	N-BUTYL-BENZENESULFONAMIDE C₁₀ H₁₅ N O₂ S IPRJXAGUEGOFGG-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.15 Å
R-Value Free: 0.173
R-Value Work: 0.152
R-Value Observed: 0.153
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.695	α = 90
b = 45.239	β = 90
c = 70.882	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
REFMAC	refinement
XDS	data reduction
SCALA	data scaling

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2012-04-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-04-04
Type: Initial release
Version 1.1: 2018-01-24
Changes: Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.