3OAA

Structure of the E.coli F1-ATP synthase inhibited by subunit Epsilon

DOI: 10.2210/pdb3OAA/pdb

Classification: Hydrolase/Transport protein
Organism(s): Escherichia coli DH1
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2010-08-05 Released: 2011-05-25
Deposition Author(s): Cingolani, G., Duncan, T.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.26 Å
R-Value Free: 0.265
R-Value Work: 0.243
R-Value Observed: 0.243

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural basis for inhibition of bacterial ATP synthase by subunit epsilon of the rotor stalk

Cingolani, G., Duncan, T.M.

To be published.

Macromolecules

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(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit alpha	A, B, C, I, J, K, Q, R A, B, C, I, J, K, Q, R, S, Y, Z, AA [auth a]	513	Escherichia coli DH1	Mutation(s): 0 Gene Names: atpA, EcDH1_4233 EC: 3.6.3.14 (PDB Primary Data), 7.1.2.2 (UniProt)
Membrane protein Mpstruc	Group: TRANSMEMBRANE PROTEINS: ALPHA-HELICAL		Sub Group: F-type ATPase	Protein: F₁-ATPase in an autoinhibited conformation
Find proteins for P0ABB0 (Escherichia coli (strain K12)) Explore P0ABB0 Go to UniProtKB: P0ABB0
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit beta	D, E, F, L, M, N, T, U D, E, F, L, M, N, T, U, V, BA [auth b], CA [auth c], DA [auth d]	459	Escherichia coli DH1	Mutation(s): 1 Gene Names: atpD, EcDH1_4235 EC: 3.6.3.14 (PDB Primary Data), 7.1.2.2 (UniProt)
Membrane protein Mpstruc	Group: TRANSMEMBRANE PROTEINS: ALPHA-HELICAL		Sub Group: F-type ATPase	Protein: F₁-ATPase in an autoinhibited conformation
Find proteins for P0ABB4 (Escherichia coli (strain K12)) Explore P0ABB4 Go to UniProtKB: P0ABB4
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase gamma chain	G, O, W, EA [auth e]	286	Escherichia coli DH1	Mutation(s): 0 Gene Names: EcDH1_4234
Membrane protein Mpstruc	Group: TRANSMEMBRANE PROTEINS: ALPHA-HELICAL		Sub Group: F-type ATPase	Protein: F₁-ATPase in an autoinhibited conformation
Find proteins for P0ABA6 (Escherichia coli (strain K12)) Explore P0ABA6 Go to UniProtKB: P0ABA6
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase epsilon chain	H, P, X, FA [auth f]	138	Escherichia coli DH1	Mutation(s): 0 Gene Names: atpC, EcDH1_4236
Membrane protein Mpstruc	Group: TRANSMEMBRANE PROTEINS: ALPHA-HELICAL		Sub Group: F-type ATPase	Protein: F₁-ATPase in an autoinhibited conformation
Find proteins for P0A6E6 (Escherichia coli (strain K12)) Explore P0A6E6 Go to UniProtKB: P0A6E6
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Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ANP Query on ANP Download Ideal Coordinates CCD File SDF format, chain GA [auth A] SDF format, chain GB [auth Q] SDF format, chain IA [auth B] SDF format, chain IB [auth R] SDF format, chain KA [auth C] SDF format, chain KB [auth S] SDF format, chain SB [auth Y] SDF format, chain TA [auth I] SDF format, chain UB [auth Z] SDF format, chain VA [auth J] SDF format, chain WB [auth a] SDF format, chain XA [auth K] MOL2 format, chain GA [auth A] MOL2 format, chain GB [auth Q] MOL2 format, chain IA [auth B] MOL2 format, chain IB [auth R] MOL2 format, chain KA [auth C] MOL2 format, chain KB [auth S] MOL2 format, chain SB [auth Y] MOL2 format, chain TA [auth I] MOL2 format, chain UB [auth Z] MOL2 format, chain VA [auth J] MOL2 format, chain WB [auth a] MOL2 format, chain XA [auth K]	GA [auth A] , GB [auth Q] , IA [auth B] , IB [auth R] , KA [auth C] , KB [auth S] , SB [auth Y] , TA [auth I] , GA [auth A], GB [auth Q], IA [auth B], IB [auth R], KA [auth C], KB [auth S], SB [auth Y], TA [auth I], UB [auth Z], VA [auth J], WB [auth a], XA [auth K]	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C₁₀ H₁₇ N₆ O₁₂ P₃ PVKSNHVPLWYQGJ-KQYNXXCUSA-N		Ligand Interaction
ADP Query on ADP Download Ideal Coordinates CCD File SDF format, chain MA [auth D] SDF format, chain MB [auth T] SDF format, chain YB [auth b] SDF format, chain ZA [auth L] MOL2 format, chain MA [auth D] MOL2 format, chain MB [auth T] MOL2 format, chain YB [auth b] MOL2 format, chain ZA [auth L]	MA [auth D], MB [auth T], YB [auth b], ZA [auth L]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Ligand Interaction
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain AC [auth b] SDF format, chain BB [auth L] SDF format, chain BC [auth c] SDF format, chain CB [auth M] SDF format, chain CC [auth d] SDF format, chain DB [auth N] SDF format, chain EB [auth O] SDF format, chain FB [auth P] SDF format, chain OA [auth D] SDF format, chain OB [auth T] SDF format, chain PA [auth E] SDF format, chain PB [auth U] SDF format, chain QA [auth F] SDF format, chain QB [auth V] SDF format, chain RA [auth G] SDF format, chain RB [auth W] SDF format, chain SA [auth H] MOL2 format, chain AC [auth b] MOL2 format, chain BB [auth L] MOL2 format, chain BC [auth c] MOL2 format, chain CB [auth M] MOL2 format, chain CC [auth d] MOL2 format, chain DB [auth N] MOL2 format, chain EB [auth O] MOL2 format, chain FB [auth P] MOL2 format, chain OA [auth D] MOL2 format, chain OB [auth T] MOL2 format, chain PA [auth E] MOL2 format, chain PB [auth U] MOL2 format, chain QA [auth F] MOL2 format, chain QB [auth V] MOL2 format, chain RA [auth G] MOL2 format, chain RB [auth W] MOL2 format, chain SA [auth H]	AC [auth b] , BB [auth L] , BC [auth c] , CB [auth M] , CC [auth d] , DB [auth N] , EB [auth O] , FB [auth P] , AC [auth b], BB [auth L], BC [auth c], CB [auth M], CC [auth d], DB [auth N], EB [auth O], FB [auth P], OA [auth D], OB [auth T], PA [auth E], PB [auth U], QA [auth F], QB [auth V], RA [auth G], RB [auth W], SA [auth H]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain AB [auth L] SDF format, chain HA [auth A] SDF format, chain HB [auth Q] SDF format, chain JA [auth B] SDF format, chain JB [auth R] SDF format, chain LA [auth C] SDF format, chain LB [auth S] SDF format, chain NA [auth D] SDF format, chain NB [auth T] SDF format, chain TB [auth Y] SDF format, chain UA [auth I] SDF format, chain VB [auth Z] SDF format, chain WA [auth J] SDF format, chain XB [auth a] SDF format, chain YA [auth K] SDF format, chain ZB [auth b] MOL2 format, chain AB [auth L] MOL2 format, chain HA [auth A] MOL2 format, chain HB [auth Q] MOL2 format, chain JA [auth B] MOL2 format, chain JB [auth R] MOL2 format, chain LA [auth C] MOL2 format, chain LB [auth S] MOL2 format, chain NA [auth D] MOL2 format, chain NB [auth T] MOL2 format, chain TB [auth Y] MOL2 format, chain UA [auth I] MOL2 format, chain VB [auth Z] MOL2 format, chain WA [auth J] MOL2 format, chain XB [auth a] MOL2 format, chain YA [auth K] MOL2 format, chain ZB [auth b]	AB [auth L] , HA [auth A] , HB [auth Q] , JA [auth B] , JB [auth R] , LA [auth C] , LB [auth S] , NA [auth D] , AB [auth L], HA [auth A], HB [auth Q], JA [auth B], JB [auth R], LA [auth C], LB [auth S], NA [auth D], NB [auth T], TB [auth Y], UA [auth I], VB [auth Z], WA [auth J], XB [auth a], YA [auth K], ZB [auth b]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction