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Download EndnoteStructural basis for inhibition of bacterial ATP synthase by subunit epsilon of the rotor stalk
Cingolani, G., Duncan, T.M.To be published.
3OAA
Structure of the E.coli F1-ATP synthase inhibited by subunit Epsilon
- DOI: 10.2210/pdb3OAA/pdb
- Classification: Hydrolase/Transport protein
- Organism(s): Escherichia coli DH1
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2010-08-05 Released: 2011-05-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.26 Å
- R-Value Free: 0.265
- R-Value Work: 0.243
- R-Value Observed: 0.243
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ATP synthase subunit alpha | A, B, C, I, J, K, Q, R, S, Y, Z, a | 513 | Escherichia coli DH1 | Mutation(s): 0 Gene Names: atpA, EcDH1_4233 EC: 3.6.3.14 (PDB Primary Data), 7.1.2.2 (UniProt) |  |
Membrane proteinMpstruc | Group: TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Sub Group: F-type ATPase | Protein: F1-ATPase in an autoinhibited conformation | ||
Find proteins for P0ABB0 (Escherichia coli (strain K12)) Explore P0ABB0 Go to UniProtKB: P0ABB0 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ATP synthase subunit beta | D, E, F, L, M, N, T, U, V, b, c, d | 459 | Escherichia coli DH1 | Mutation(s): 1 Gene Names: atpD, EcDH1_4235 EC: 3.6.3.14 (PDB Primary Data), 7.1.2.2 (UniProt) |  |
Membrane proteinMpstruc | Group: TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Sub Group: F-type ATPase | Protein: F1-ATPase in an autoinhibited conformation | ||
Find proteins for P0ABB4 (Escherichia coli (strain K12)) Explore P0ABB4 Go to UniProtKB: P0ABB4 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ATP synthase gamma chain | G, O, W, e | 286 | Escherichia coli DH1 | Mutation(s): 0 Gene Names: EcDH1_4234 |  |
Membrane proteinMpstruc | Group: TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Sub Group: F-type ATPase | Protein: F1-ATPase in an autoinhibited conformation | ||
Find proteins for P0ABA6 (Escherichia coli (strain K12)) Explore P0ABA6 Go to UniProtKB: P0ABA6 | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ATP synthase epsilon chain | H, P, X, f | 138 | Escherichia coli DH1 | Mutation(s): 0 Gene Names: atpC, EcDH1_4236 |  |
Membrane proteinMpstruc | Group: TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Sub Group: F-type ATPase | Protein: F1-ATPase in an autoinhibited conformation | ||
Find proteins for P0A6E6 (Escherichia coli (strain K12)) Explore P0A6E6 Go to UniProtKB: P0A6E6 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ANP Query on ANP | A, B, C, I, J, K, Q, R, S, Y, Z, a | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N |  | Ligand Interaction | |
| ADP Query on ADP | D, L, T, b | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | D, E, F, G, H, L, M, N, O, P, T, U, V, W, b, c, d | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| MG Query on MG | A, B, C, D, I, J, K, L, Q, R, S, T, Y, Z, a, b | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.26 Å
- R-Value Free: 0.265
- R-Value Work: 0.243
- R-Value Observed: 0.243
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 435.97 | α = 90 |
| b = 183 | β = 108.99 |
| c = 225.39 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2010-08-05
- Released Date: 2011-05-25 Deposition Author(s): Cingolani, G., Duncan, T.M.
