3OAA

Structure of the E.coli F1-ATP synthase inhibited by subunit Epsilon


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.26 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.243 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for inhibition of bacterial ATP synthase by subunit epsilon of the rotor stalk

Cingolani, G.Duncan, T.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit alpha
A, B, C, I, J, K, Q, R, S, Y, Z, a
513Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: atpA (papA, uncA)
EC: 3.6.3.14
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
Subunit C of the F1FO ATP synthase
Find proteins for P0ABB0 (Escherichia coli (strain K12))
Go to UniProtKB:  P0ABB0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ATP synthase subunit beta
D, E, F, L, M, N, T, U, V, b, c, d
459Escherichia coli (strain K12)Mutation(s): 1 
Gene Names: atpD (papB, uncD)
EC: 3.6.3.14
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
Subunit C of the F1FO ATP synthase
Find proteins for P0ABB4 (Escherichia coli (strain K12))
Go to UniProtKB:  P0ABB4
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ATP synthase gamma chain
G, O, W, e
286Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: atpG (papC, uncG)
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
Subunit C of the F1FO ATP synthase
Find proteins for P0ABA6 (Escherichia coli (strain K12))
Go to UniProtKB:  P0ABA6
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
ATP synthase epsilon chain
H, P, X, f
138Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: atpC (papG, uncC)
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
F-type ATPase
Protein: 
Subunit C of the F1FO ATP synthase
Find proteins for P0A6E6 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A6E6
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
b, c, D, d, E, F, G, H, L, M, N, O, P, T, U, V, W
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
ADP
Query on ADP

Download SDF File 
Download CCD File 
b, D, L, T
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
ANP
Query on ANP

Download SDF File 
Download CCD File 
A, a, B, C, I, J, K, Q, R, S, Y, Z
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
a, A, b, B, C, D, I, J, K, L, Q, R, S, T, Y, Z
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.26 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.243 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 435.970α = 90.00
b = 183.000β = 108.99
c = 225.390γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data collection
PHENIXrefinement
HKL-2000data scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-05-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance