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Download EndnoteCrystal structure of CBS domain of a putative transporter from Clostridium difficile 630
Nocek, B., Tesar, C., Cobb, G., Joachimiak, A., MCSGTo be published.
3LV9
Crystal structure of CBS domain of a putative transporter from Clostridium difficile 630
- DOI: 10.2210/pdb3LV9/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Peptoclostridium difficile (strain 630)
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2010-02-19 Released: 2010-03-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.4 Å
- R-Value Free: 0.262
- R-Value Work: 0.201
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Putative transporter | A | 148 | Peptoclostridium difficile (strain 630) | Mutation(s): 0 |
Find proteins for Q183U2 (Peptoclostridium difficile (strain 630)) Go to UniProtKB: Q183U2 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | A | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.4 Å
- R-Value Free: 0.262
- R-Value Work: 0.201
- Space Group: P 32 2 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 43.641 | α = 90.00 |
| b = 43.641 | β = 90.00 |
| c = 127.763 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data reduction |
| DM | phasing |
| SHELX | phasing |
| MLPHARE | phasing |
| ARP/wARP | model building |
| DM | model building |
| REFMAC | refinement |
| Coot | model building |
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| SHELX | model building |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2010-02-19
- Released Date: 2010-03-09
- Deposition Author(s): Nocek, B., Tesar, C., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
