3LAQ

Structure-based engineering of species selectivity in the uPA-uPAR interaction


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.341 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.237 

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This is version 1.2 of the entry. See complete history


Literature

Structure-based engineering of species selectivity in the interaction between urokinase and its receptor: implication for preclinical cancer therapy.

Lin, L.Gardsvoll, H.Huai, Q.Huang, M.Ploug, M.

(2010) J Biol Chem 285: 10982-10992

  • DOI: https://doi.org/10.1074/jbc.M109.093492
  • Primary Citation of Related Structures:  
    3LAQ

  • PubMed Abstract: 

    The high affinity interaction between the urokinase-type plasminogen activator (uPA) and its glycolipid-anchored receptor (uPAR) is decisive for cell surface-associated plasminogen activation. Because plasmin activity controls fibrinolysis in a variety of pathological conditions, including cancer and wound healing, several intervention studies have focused on targeting the uPA.uPAR interaction in vivo. Evaluations of such studies in xenotransplanted tumor models are, however, complicated by the pronounced species selectivity in this interaction. We now report the molecular basis underlying this difference by solving the crystal structure for the murine uPA.uPAR complex and demonstrate by extensive surface plasmon resonance studies that the kinetic rate constants for this interaction can be swapped completely between these orthologs by exchanging only two residues. This study not only discloses the structural basis required for a successful rational design of the species selectivity in the uPA.uPAR interaction, which is highly relevant for functional studies in mouse models, but it also suggests the possible development of general inhibitors that will target the uPA.uPAR interaction across species barriers.


  • Organizational Affiliation

    Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts 02215, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Urokinase-type plasminogen activatorA,
C [auth B]
134Mus musculusMutation(s): 0 
Gene Names: Plau
EC: 3.4.21.73
UniProt & NIH Common Fund Data Resources
Find proteins for P06869 (Mus musculus)
Explore P06869 
Go to UniProtKB:  P06869
IMPC:  MGI:97611
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP06869
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Urokinase plasminogen activator surface receptorB [auth U],
D [auth V]
277Mus musculusMutation(s): 0 
Gene Names: Plaur
UniProt & NIH Common Fund Data Resources
Find proteins for P35456 (Mus musculus)
Explore P35456 
Go to UniProtKB:  P35456
IMPC:  MGI:97612
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35456
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.341 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.237 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.421α = 90
b = 137.248β = 106.17
c = 65.785γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
AMoREphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

  • Released Date: 2010-02-02 
  • Deposition Author(s): Huang, M.

Revision History  (Full details and data files)

  • Version 1.0: 2010-02-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary