3LAQ

Structure-based engineering of species selectivity in the uPA-uPAR interaction

• PDB DOI: https://doi.org/10.2210/pdb3LAQ/pdb

• Classification: Hydrolase/Hydrolase Receptor
• Organism(s): Mus musculus
• Expression System: Drosophila
• Mutation(s): No 


• Deposited: 2010-01-06 Released: 2010-02-02 
• Deposition Author(s): Huang, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.20 Å
• R-Value Free: 0.341 
• R-Value Work: 0.231 
• R-Value Observed: 0.237 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 92.55 kDa 
• Atom Count: 6,035 
• Modelled Residue Count: 767 
• Deposited Residue Count: 822 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Urokinase-type plasminogen activator	A, C [auth B]	134	Mus musculus	Mutation(s): 0  Gene Names: Plau EC: 3.4.21.73
UniProt & NIH Common Fund Data Resources
Find proteins for P06869 (Mus musculus) Explore P06869  Go to UniProtKB:  P06869
IMPC:  MGI:97611

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Urokinase plasminogen activator surface receptor	B [auth U], D [auth V]	277	Mus musculus	Mutation(s): 0  Gene Names: Plaur
UniProt & NIH Common Fund Data Resources
Find proteins for P35456 (Mus musculus) Explore P35456  Go to UniProtKB:  P35456
IMPC:  MGI:97612

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	E [auth U], F [auth U], G [auth U], H [auth U], I [auth U], J [auth V], K [auth V], L [auth V], M [auth V], N [auth V]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.20 Å
• R-Value Free: 0.341 
• R-Value Work: 0.231 
• R-Value Observed: 0.237 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.421	α = 90
b = 137.248	β = 106.17
c = 65.785	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
AMoRE	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-02-02 
Deposition Author(s): Huang, M.

Revision History  

• Version 1.0: 2010-02-02
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Refinement description, Version format compliance
• Version 1.2: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Structure summary