Download MendeleyStructure of a Putative Chaperone Protein Dnaj from Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Bearden, J., Joachimiak, A., Anderson, W.F.To be published.
3I38
Structure of a putative chaperone protein dnaj from klebsiella pneumoniae subsp. pneumoniae mgh 78578
- PDB DOI: https://doi.org/10.2210/pdb3I38/pdb
- Classification: CHAPERONE
- Organism(s): Klebsiella pneumoniae subsp. pneumoniae MGH 78578
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2009-06-30 Released: 2009-07-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.262
- R-Value Work: 0.217
- R-Value Observed: 0.219
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative chaperone DnaJ | 109 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | Mutation(s): 0 Gene Names: cbpA, KPN78578_44400, KPN_04509 |  | |
UniProt | |||||
Find proteins for A6TH30 (Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)) Explore A6TH30 Go to UniProtKB: A6TH30 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A6TH30 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.262
- R-Value Work: 0.217
- R-Value Observed: 0.219
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.805 | α = 81.75 |
| b = 61.626 | β = 78.71 |
| c = 92.907 | γ = 83.79 |
| Software Name | Purpose |
|---|---|
| Blu-Ice | data collection |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | model building |
| SHELXD | phasing |
| RESOLVE | model building |
| CCP4 | model building |
| ARP/wARP | model building |
| Coot | model building |
| REFMAC | refinement |
| ADSC | data collection |
| HKL-2000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
| ARP | model building |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2009-07-14 Deposition Author(s): Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Bearden, J., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-07-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Derived calculations, Refinement description, Version format compliance - Version 1.2: 2017-10-25
Changes: Author supporting evidence, Refinement description - Version 1.3: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary
