3I38 | pdb_00003i38

Structure of a putative chaperone protein dnaj from klebsiella pneumoniae subsp. pneumoniae mgh 78578

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	POTRA	e3i38L1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
K	LHC	e3i38K1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: HTH	T: winged helix domain	F: LHC	ECOD (v294.1)
J	POTRA	e3i38J1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
I	POTRA	e3i38I1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
H	POTRA	e3i38H1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
G	POTRA	e3i38G1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
F	POTRA	e3i38F1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
E	POTRA	e3i38E1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
D	POTRA	e3i38D1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
C	POTRA	e3i38C1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
B	POTRA	e3i38B1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)
A	POTRA	e3i38A1	A: a/b three-layered sandwiches	X: CCHHC domain	H: CCHHC domain	T: CCHHC domain	F: POTRA	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
K	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
J	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
I	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
I	1.20.5.460	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)
H	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
G	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
F	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
E	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
D	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
C	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
B	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
A	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Putative chaperone DnaJ	DNA binding bent DNA binding binding nucleic acid binding unfolded protein binding protein binding	protein refolding primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure nucleoid intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001623	DnaJ domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008971	HSP40/DnaJ peptide-binding	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR018253	DnaJ domain, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR023859	DNA-binding protein, curved-DNA	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002939	Chaperone DnaJ, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036869	Chaperone J-domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.