3ZRV

The high resolution structure of a dimeric Hamp-Dhp fusion displays asymmetry - A291F mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Mechanism of Regulation of Receptor Histidine Kinases.

Ferris, H.U.Dunin-Horkawicz, S.Hornig, N.Hulko, M.Martin, J.Schultz, J.E.Zeth, K.Lupas, A.N.Coles, M.

(2012) Structure 20: 56

  • DOI: 10.1016/j.str.2011.11.014
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Bacterial transmembrane receptors regulate an intracellular catalytic output in response to extracellular sensory input. To investigate the conformational changes that relay the regulatory signal, we have studied the HAMP domain, a ubiquitous intrace ...

    Bacterial transmembrane receptors regulate an intracellular catalytic output in response to extracellular sensory input. To investigate the conformational changes that relay the regulatory signal, we have studied the HAMP domain, a ubiquitous intracellular module connecting input to output domains. HAMP forms a parallel, dimeric, four-helical coiled coil, and rational substitutions in our model domain (Af1503 HAMP) induce a transition in its interhelical packing, characterized by axial rotation of all four helices (the gearbox signaling model). We now illustrate how these conformational changes are propagated to a downstream domain by fusing Af1503 HAMP variants to the DHp domain of EnvZ, a bacterial histidine kinase. Structures of wild-type and mutant constructs are correlated with ligand response in vivo, clearly associating them with distinct signaling states. We propose that altered recognition of the catalytic domain by DHp, rather than a shift in position of the phospho-accepting histidine, forms the basis for regulation of kinase activity.


    Organizational Affiliation

    Department of Protein Evolution, Max-Planck-Institute for Developmental Biology, 72076 Tübingen, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HAMP, OSMOLARITY SENSOR PROTEIN ENVZ
A, B
116Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)Escherichia coli (strain K12)
This entity is chimeric
Mutation(s): 1 
Gene Names: envZ (ompB, perA, tpo)
EC: 2.7.13.3
Find proteins for O28769 (Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
Go to UniProtKB:  O28769
Find proteins for P0AEJ4 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AEJ4
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.196 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 43.260α = 90.00
b = 56.790β = 90.00
c = 83.650γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
DMphasing
XDSdata reduction
XDSdata scaling
SHARPphasing
BUCCANEERmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-07-06
    Type: Initial release
  • Version 1.1: 2012-04-25
    Type: Database references, Version format compliance
  • Version 1.2: 2017-03-15
    Type: Source and taxonomy