3X2P

Neutron and X-ray joint refined structure of PcCel45A with cellopentaose at 298K.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.99 Å
  • R-Value Free: 0.142 
  • R-Value Work: 0.134 

  • Method: NEUTRON DIFFRACTION
  • Resolution: 1.518 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.218 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography

Nakamura, A.Ishida, T.Kusaka, K.Yamada, T.Fushinobu, S.Tanaka, I.Kaneko, S.Ohta, K.Tanaka, H.Inaka, K.Higuchi, Y.Niimura, N.Samejima, M.Igarashi, K.

(2015) SCI ADV 1: e1500263-e1500263


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Endoglucanase V-like protein
A
180Phanerochaete chrysosporiumMutation(s): 0 
Gene Names: egv
Find proteins for B3Y002 (Phanerochaete chrysosporium)
Go to UniProtKB:  B3Y002
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CE5
Query on CE5

Download SDF File 
Download CCD File 
A
CELLOPENTAOSE
C30 H52 O26
FTNIPWXXIGNQQF-FFFJRYSISA-N
 Ligand Interaction
DOD
Query on DOD

Download SDF File 
Download CCD File 
A
DEUTERATED WATER
D2 O
XLYOFNOQVPJJNP-ZSJDYOACSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
41Q
Query on 41Q
A
L-PEPTIDE LINKINGC4 H8 N2 O3ASN
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.99 Å
  • R-Value Free: 0.142 
  • R-Value Work: 0.134 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 46.478α = 90.00
b = 58.635β = 90.00
c = 64.744γ = 90.00
  • Method: NEUTRON DIFFRACTION
  • Resolution: 1.518 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.218 
Software Package:
Software NamePurpose
HKL-2000data collection
STARGAZERdata reduction
PHENIXrefinement
STARGAZERdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-10-14
    Type: Initial release
  • Version 1.1: 2015-11-04
    Type: Other
  • Version 1.2: 2018-03-07
    Type: Data collection
  • Version 1.3: 2018-05-16
    Type: Data collection