3X2K

X-ray structure of PcCel45A D114N with cellopentaose at 95K.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.182 Å
  • R-Value Free: 0.131 
  • R-Value Work: 0.106 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography

Nakamura, A.Ishida, T.Kusaka, K.Yamada, T.Fushinobu, S.Tanaka, I.Kaneko, S.Ohta, K.Tanaka, H.Inaka, K.Higuchi, Y.Niimura, N.Samejima, M.Igarashi, K.

(2015) SCI ADV 1: e1500263-e1500263


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Endoglucanase V-like protein
A
180Phanerochaete chrysosporiumMutation(s): 1 
Gene Names: egv
Find proteins for B3Y002 (Phanerochaete chrysosporium)
Go to UniProtKB:  B3Y002
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CE5
Query on CE5

Download SDF File 
Download CCD File 
A
CELLOPENTAOSE
C30 H52 O26
FTNIPWXXIGNQQF-FFFJRYSISA-N
 Ligand Interaction
BGC
Query on BGC

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Download CCD File 
A
BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
 Ligand Interaction
GLC
Query on GLC

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Download CCD File 
A
ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
 Ligand Interaction
40S
Query on 40S

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Download CCD File 
A
3-methylpentane-1,5-diol
C6 H14 O2
SXFJDZNJHVPHPH-UHFFFAOYSA-N
 Ligand Interaction
TRS
Query on TRS

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Download CCD File 
A
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.182 Å
  • R-Value Free: 0.131 
  • R-Value Work: 0.106 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 38.616α = 90.00
b = 58.323β = 90.00
c = 62.792γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-10-07
    Type: Initial release