3WHE

A new conserved neutralizing epitope at the globular head of hemagglutinin in H3N2 influenza viruses


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4 Å
  • R-Value Free: 0.308 
  • R-Value Work: 0.235 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Conserved Neutralizing Epitope at Globular Head of Hemagglutinin in H3N2 Influenza Viruses.

Iba, Y.Fujii, Y.Ohshima, N.Sumida, T.Kubota-Koketsu, R.Ikeda, M.Wakiyama, M.Shirouzu, M.Okada, J.Okuno, Y.Kurosawa, Y.Yokoyama, S.

(2014) J.Virol. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemagglutinin
A, B, C, D, E, F, G, H, I, J, K, L
493Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for T2HNI1 (Influenza A virus)
Go to UniProtKB:  T2HNI1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
immunoglobulin heavy chain
M, O, Q, S, U, W, Y, 1, 3, 5, 7, 9
226N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
immunoglobulin light chain
N, P, R, T, V, X, Z, 2, 4, 6, 8, 0
220N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MAN
Query on MAN

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4 Å
  • R-Value Free: 0.308 
  • R-Value Work: 0.235 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 391.037α = 90.00
b = 241.173β = 123.62
c = 223.214γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
CNSrefinement
PHASESphasing
XSCALEdata scaling
XDSdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-04-23
    Type: Initial release