3WHE | pdb_00003whe

A new conserved neutralizing epitope at the globular head of hemagglutinin in H3N2 influenza viruses

External Resource: Annotation

Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth P]	e3wheP1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
Y [auth N]	e3wheN1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
JA [auth 0]	e3whe01	A: Outer membrane meander beta-barrels	X: Porins	H: Porin	T: Hemagglutinin	F:	ECOD (20:10:01)
IA [auth 8]	e3whe81	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
HA [auth 6]	e3whe61	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
GA [auth 4]	e3whe41	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
FA [auth 2]	e3whe21	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
EA [auth Z]	e3wheZ1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
DA [auth X]	e3wheX1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
CA [auth V]	e3wheV1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
BA [auth T]	e3wheT1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
AA [auth R]	e3wheR1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
X [auth 9]	e3whe91	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
W [auth 7]	e3whe71	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
V [auth 5]	e3whe51	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
U [auth 3]	e3whe31	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
T [auth 1]	e3whe11	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
S [auth Y]	e3wheY1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
R [auth W]	e3wheW1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
Q [auth U]	e3wheU1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
P [auth S]	e3wheS1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
O [auth Q]	e3wheQ1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
N [auth O]	e3wheO1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
M	e3wheM1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
L	e3wheL1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
K	e3wheK1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
J	e3wheJ1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
I	e3wheI1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
H	e3wheH1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
G	e3wheG1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
F	e3wheF1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
E	e3wheE1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
D	e3wheD1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
C	e3wheC1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
B	e3wheB1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)
A	e3wheA1	A: Glycosyl hydrolase domain-like	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Y_phosphatase, PTP-SAK	F:	ECOD (20:10:01)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
AA [auth R], BA [auth T], CA [auth V], DA [auth X], EA [auth Z], AA [auth R], BA [auth T], CA [auth V], DA [auth X], EA [auth Z], FA [auth 2], GA [auth 4], HA [auth 6], IA [auth 8], JA [auth 0], Y [auth N], Z [auth P]	F005-126 Fab, anti-anti-influenza hemagglutinin, neutralizing	L-LAMBDA	Homo sapiens (human)	IGLV1-4001, IGLJ201, IGLJ302, IGLJ301, IGLC201, IGLC202, IGLC3*04	V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA	IG	FAB-GAMMA-1_LAMBDA	IMGT (202609-0)
M, N [auth O], O [auth Q], P [auth S], Q [auth U], M, N [auth O], O [auth Q], P [auth S], Q [auth U], R [auth W], S [auth Y], T [auth 1], U [auth 3], V [auth 5], W [auth 7], X [auth 9]	F005-126 Fab, anti-anti-influenza hemagglutinin, neutralizing	VH-CH1	Homo sapiens (human)	IGHV1-1801, IGHV1-1804, IGHJ601, IGHJ602, IGHG101, IGHG102, IGHG104, IGHG105	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-1_LAMBDA	IMGT (202609-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
AA [auth R], BA [auth T], CA [auth V], DA [auth X], EA [auth Z], AA [auth R], BA [auth T], CA [auth V], DA [auth X], EA [auth Z], FA [auth 2], GA [auth 4], HA [auth 6], IA [auth 8], JA [auth 0], Y [auth N], Z [auth P]	Light Chain	IGLV1	Lambda	hemagglutinin	SAbDab (2026-03-13)
M, N [auth O], O [auth Q], P [auth S], Q [auth U], M, N [auth O], O [auth Q], P [auth S], Q [auth U], R [auth W], S [auth Y], T [auth 1], U [auth 3], V [auth 5], W [auth 7], X [auth 9]	Heavy Chain	IGHV1	-	hemagglutinin	SAbDab (2026-03-13)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth R], BA [auth T], CA [auth V], DA [auth X], EA [auth Z], AA [auth R], BA [auth T], CA [auth V], DA [auth X], EA [auth Z], FA [auth 2], GA [auth 4], HA [auth 6], IA [auth 8], JA [auth 0], Y [auth N], Z [auth P]	immunoglobulin light chain	-	-	-
M, N [auth O], O [auth Q], P [auth S], Q [auth U], M, N [auth O], O [auth Q], P [auth S], Q [auth U], R [auth W], S [auth Y], T [auth 1], U [auth 3], V [auth 5], W [auth 7], X [auth 9]	immunoglobulin heavy chain	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Hemagglutinin	host cell surface binding binding host cell surface receptor binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane cellular process cellular component organization or biogenesis virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane cellular process cellular component organization or biogenesis virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction non-lytic viral release viral budding virion assembly exit from host cell viral budding from plasma membrane viral release from host cell import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell	cellular anatomical structure membrane virion component virion membrane viral membrane viral envelope host cell plasma membrane host cellular component host cell part host cell membrane other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001364	Haemagglutinin, influenzavirus A/B	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000149	Haemagglutinin, influenzavirus A	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013828	Haemagglutinin, HA1 chain, alpha/beta domain superfamily	Homologous Superfamily