3V6O
Leptin Receptor-antibody complex
- PDB DOI: https://doi.org/10.2210/pdb3V6O/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens, Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2011-12-20 Released: 2012-03-14 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.213 
- R-Value Work: 0.171 
- R-Value Observed: 0.173 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Leptin receptor | 206 | Homo sapiens | Mutation(s): 0  Gene Names: DB, LEPR, OBR | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P48357 (Homo sapiens) Explore P48357  Go to UniProtKB:  P48357 | |||||
PHAROS:  P48357 GTEx:  ENSG00000116678  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P48357 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Monoclonal antibody 9F8 fab fragment Heavy chain | 221 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Monoclonal antibody 9F8 fab fragment Light chain | 215 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | MA [auth F] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CYS Query on CYS | G [auth A], P [auth B] | CYSTEINE C3 H7 N O2 S XUJNEKJLAYXESH-REOHCLBHSA-N | |||
EDO Query on EDO | BA [auth D] CA [auth D] DA [auth D] EA [auth D] FA [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
ACT Query on ACT | AA [auth D] IA [auth E] NA [auth F] OA [auth F] V [auth C] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
NA Query on NA | Z [auth C] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.213 
- R-Value Work: 0.171 
- R-Value Observed: 0.173 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 89.814 | α = 90 |
b = 118.829 | β = 90 |
c = 171.281 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
ADSC | data collection |
MOSFLM | data reduction |
SCALA | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2012-03-14  Deposition Author(s): Carpenter, B., Hemsworth, G.R., Ross, R.J., Artymiuk, P.J.
Revision History (Full details and data files)
- Version 1.0: 2012-03-14
Type: Initial release - Version 1.1: 2012-04-25
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations, Structure summary