Download MendeleyThe structure of a protein with a GntR superfamily winged-helix-turn-helix domain from Halomicrobium mukohataei.
Cuff, M.E., Bigelow, L., Bearden, J., Joachimiak, A.To be published.
3U1D | pdb_00003u1d
The structure of a protein with a GntR superfamily winged-helix-turn-helix domain from Halomicrobium mukohataei.
- PDB DOI: https://doi.org/10.2210/pdb3U1D/pdb
- Classification: Structural Genomics, Unknown Function
- Organism(s): Halomicrobium mukohataei DSM 12286
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-09-29 Released: 2011-12-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.194 (Depositor), 0.203 (DCC)
- R-Value Work: 0.171 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.173 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein | 151 | Halomicrobium mukohataei DSM 12286 | Mutation(s): 0 Gene Names: Hmuk_3159 |  | |
UniProt | |||||
Find proteins for C7P2E9 (Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541)) Explore C7P2E9 Go to UniProtKB: C7P2E9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C7P2E9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TRS Query on TRS | J [auth B], K [auth B] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
| PEG Query on PEG | F [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | G [auth B], L [auth B], M [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A], D [auth A], E [auth A], H [auth B], I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.194 (Depositor), 0.203 (DCC)
- R-Value Work: 0.171 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.173 (Depositor)
Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.214 | α = 90 |
| b = 57.214 | β = 90 |
| c = 218.354 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MLPHARE | phasing |
| DM | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| SOLVE | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
| CCP4 | phasing |
| O | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2011-12-07 Deposition Author(s): Cuff, M.E., Bigelow, L., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2011-12-07
Type: Initial release - Version 1.1: 2017-11-08
Changes: Refinement description - Version 1.2: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary
