3SOO

Crystal structure of a LINE-1 type transposase domain-containing protein 1 (L1TD1) from HOMO SAPIENS at 2.73 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.226 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of a LINE-1 type transposase domain-containing protein 1 (L1TD1) from HOMO SAPIENS at 2.73 A resolution

Joint Center for Structural Genomics (JCSG)Partnership for Stem Cell Biology (STEMCELL)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
LINE-1 type transposase domain-containing protein 1
A, B, C
88Homo sapiensMutation(s): 0 
Gene Names: L1TD1 (ECAT11)
Find proteins for Q5T7N2 (Homo sapiens)
Go to Gene View: L1TD1
Go to UniProtKB:  Q5T7N2
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
MLY
Query on MLY
A, B, C
L-PEPTIDE LINKINGC8 H18 N2 O2LYS
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 69.140α = 90.00
b = 69.140β = 90.00
c = 292.270γ = 120.00
Software Package:
Software NamePurpose
SHARPphasing
SHELXDphasing
BUSTER-TNTrefinement
PDB_EXTRACTdata extraction
SHELXphasing
XSCALEdata scaling
XDSdata reduction
MolProbitymodel building
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-07-20
    Type: Initial release
  • Version 1.1: 2015-10-21
    Type: Structure summary
  • Version 1.2: 2017-11-08
    Type: Refinement description