3SOO | pdb_00003soo

Crystal structure of a LINE-1 type transposase domain-containing protein 1 (L1TD1) from HOMO SAPIENS at 2.73 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2 Family	L1 transposable element C-terminal dsRBD domain-like	8047048	4005420	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	L1ORF1p CTD-like	8052164	3002096	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	L1ORF1p CTD-like	8052164	3002096	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	L1ORF1p CTD-like	8052164	3002096	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Tnp_22_dsRBD	e3sooC1	A: a+b two layers	X: dsRBD-like	H: C-terminal domain in LINE-1 ORF1p (From Topology)	T: C-terminal domain in LINE-1 ORF1p	F: Tnp_22_dsRBD	ECOD (1.6)
B	Tnp_22_dsRBD	e3sooB1	A: a+b two layers	X: dsRBD-like	H: C-terminal domain in LINE-1 ORF1p (From Topology)	T: C-terminal domain in LINE-1 ORF1p	F: Tnp_22_dsRBD	ECOD (1.6)
A	Tnp_22_dsRBD	e3sooA1	A: a+b two layers	X: dsRBD-like	H: C-terminal domain in LINE-1 ORF1p (From Topology)	T: C-terminal domain in LINE-1 ORF1p	F: Tnp_22_dsRBD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.250.20	Alpha Beta	2-Layer Sandwich	Rec A Protein	domain 2	CATH (4.3.0)
B	3.30.250.20	Alpha Beta	2-Layer Sandwich	Rec A Protein	domain 2	CATH (4.3.0)
A	3.30.250.20	Alpha Beta	2-Layer Sandwich	Rec A Protein	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF17490	L1 transposable element dsRBD-like domain (Tnp_22_dsRBD)	L1 transposable element dsRBD-like domain	This entry represents the double stranded RNA-binding-like domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	LINE-1 type transposase domain-containing protein 1	RNA binding binding nucleic acid binding single-stranded RNA binding	cellular process transposition retrotransposition	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle intracellular membrane-bounded organelle protein-containing complex ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR042566	L1 transposable element, C-terminal domain	Homologous Superfamily
A, B, C	IPR035300	L1 transposable element, dsRBD-like domain	Domain
A, B, C	IPR043636	L1 transposable element, RRM domain	Domain
A, B, C	IPR004244	Transposase, L1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: Q5T7N2	colorectal cancer Crohn disease ulcerative colitis

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084
A, B, C	MSE	Parent Component: MET RESID: AA0075

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.