3SFW

Crystal structure of dihydropyrimidinase from Brevibacillus agri NCHU1002


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.147 
  • R-Value Observed: 0.149 

wwPDB Validation 3D Report Full Report



Literature

Crystal structure of dihydropyrimidinase from Brevibacillus agri NCHU1002

Wang, W.C.Wu, H.M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DihydropyrimidinaseAB461Brevibacillus agriMutation(s): 0 
Gene Names: pydB
EC: 3.5.2.2
Find proteins for Q846U5 (Brevibacillus agri)
Explore Q846U5 
Go to UniProtKB:  Q846U5
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download CCD File 
A, B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
KCX
Query on KCX
A,BL-PEPTIDE LINKINGC7 H14 N2 O4LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.147 
  • R-Value Observed: 0.149 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.807α = 90
b = 109.112β = 90
c = 140.984γ = 90
Software Package:
Software NamePurpose
SPECdata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2011-06-14 
  • Released Date: 2012-06-20 
  • Deposition Author(s): Wang, W.C., Wu, H.M.

Revision History 

  • Version 1.0: 2012-06-20
    Type: Initial release