3S3J

Transglutaminase 2 in complex with a novel inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Inhibitors of Transglutaminase 2: A therapeutic option in celiac disease

Lindemann, I.Boettcher, J.Oertel, K.Weber, J.Hils, M.Pasternack, R.Heine, A.Klebe, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein-glutamine gamma-glutamyltransferase 2
A
694Homo sapiensMutation(s): 0 
Gene Names: TGM2
EC: 2.3.2.13
Find proteins for P21980 (Homo sapiens)
Go to Gene View: TGM2
Go to UniProtKB:  P21980
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Peptide inhibitor
B
5N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Biologically Interesting Molecules 1 Unique
IDChainsNameType/Class2D Diagram3D Interactions
PRD_000935
Query on PRD_000935
BN-[(benzyloxy)carbonyl]-6-diazonio-5-oxo-L-norleucyl-L-valyl-L-prolyl-L-leucinePeptide-like / Inhibitor

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.214 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 72.470α = 90.00
b = 72.470β = 90.00
c = 316.461γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
MAR345dtbdata collection
PHASERphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-06-06
    Type: Initial release
  • Version 1.1: 2013-06-26
    Type: Other
  • Version 1.2: 2013-10-16
    Type: Derived calculations