3RYK

1.63 Angstrom resolution crystal structure of dTDP-4-dehydrorhamnose 3,5-epimerase (rfbC) from Bacillus anthracis str. Ames with TDP and PPi bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.631 Å
  • R-Value Free: 0.160 
  • R-Value Work: 0.123 

wwPDB Validation 3D Report Full Report


This is version 2.2 of the entry. See complete history

Literature

Structure of the Bacillus anthracis dTDP-L-rhamnose-biosynthetic enzyme dTDP-4-dehydrorhamnose 3,5-epimerase (RfbC)

Shornikov, A.Tran, H.Macias, J.Halavaty, A.S.Minasov, G.Anderson, W.F.Kuhn, M.

(2017) Acta Crystallogr.,Sect.F 73: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
dTDP-4-dehydrorhamnose 3,5-epimerase
A, B
205Bacillus anthracisGene Names: rfbC
EC: 5.1.3.13
Find proteins for Q81TP1 (Bacillus anthracis)
Go to UniProtKB:  Q81TP1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
POP
Query on POP

Download SDF File 
Download CCD File 
A
PYROPHOSPHATE 2-
H2 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-L
 Ligand Interaction
TYD
Query on TYD

Download SDF File 
Download CCD File 
B
THYMIDINE-5'-DIPHOSPHATE
C10 H16 N2 O11 P2
UJLXYODCHAELLY-XLPZGREQSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 86.652α = 90.00
b = 86.652β = 90.00
c = 45.101γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data scaling
Blu-Icedata collection
REFMACrefinement
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-05-25
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 2.0: 2017-06-21
    Type: Advisory, Atomic model, Derived calculations
  • Version 2.1: 2017-11-08
    Type: Refinement description
  • Version 2.2: 2017-12-13
    Type: Database references