3REB

HIV-1 Nef protein in complex with engineered Hck-SH3 domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.45 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.216 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Molecular design, functional characterization and structural basis of a protein inhibitor against the HIV-1 pathogenicity factor Nef.

Breuer, S.Schievink, S.I.Schulte, A.Blankenfeldt, W.Fackler, O.T.Geyer, M.

(2011) PLoS ONE 6: e20033-e20033


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein Nef
A, C
166Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2)Mutation(s): 4 
Gene Names: nef
Find proteins for P03407 (Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2))
Go to UniProtKB:  P03407
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Tyrosine-protein kinase HCK
B, D
90Homo sapiensMutation(s): 6 
Gene Names: HCK
EC: 2.7.10.2
Find proteins for P08631 (Homo sapiens)
Go to Gene View: HCK
Go to UniProtKB:  P08631
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.45 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.216 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 112.460α = 90.00
b = 112.460β = 90.00
c = 130.030γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
REFMACphasing
ADSCdata collection
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-06-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2018-10-10
    Type: Data collection, Database references, Structure summary