3Q6K

Salivary protein from Lutzomyia longipalpis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.218 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The three-dimensional structure of an insec yellow/major royal jelly protein family member and its function in blood feeding by the Leishmania vector Lutzomyia longipalpis

Xu, X.Chang, B.W.Collin, N.Valenzuela, J.G.Ribeiro, J.M.Andersen, J.F.

(2011) J.Biol.Chem. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
43.2 kDa salivary protein
A, B
381Lutzomyia longipalpisMutation(s): 0 
Find proteins for Q5WPU9 (Lutzomyia longipalpis)
Go to UniProtKB:  Q5WPU9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CIT
Query on CIT

Download SDF File 
Download CCD File 
A, B
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
SRO
Query on SRO

Download SDF File 
Download CCD File 
A, B
SEROTONIN
3-(2-AMINOETHYL)-1H-INDOL-5-OL
C10 H12 N2 O
QZAYGJVTTNCVMB-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
SROKd: 4.3 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.218 
  • Space Group: P 62 2 2
Unit Cell:
Length (Å)Angle (°)
a = 120.012α = 90.00
b = 120.012β = 90.00
c = 244.747γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-07-27
    Type: Initial release
  • Version 1.1: 2017-11-08
    Type: Refinement description