Alkyl Amine Renin Inhibitors: Filling S1 from S3

Experimental Data Snapshot

  • Resolution: 2.60 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.204 

wwPDB Validation   3D Report Full Report

This is version 2.2 of the entry. See complete history


Biphenyl/diphenyl ether renin inhibitors: Filling the S1 pocket of renin via the S3 pocket.

Yuan, J.Simpson, R.D.Zhao, W.Tice, C.M.Xu, Z.Cacatian, S.Jia, L.Flaherty, P.T.Guo, J.Ishchenko, A.Wu, Z.McKeever, B.M.Scott, B.B.Bukhtiyarov, Y.Berbaum, J.Panemangalore, R.Bentley, R.Doe, C.P.Harrison, R.K.McGeehan, G.M.Singh, S.B.Dillard, L.W.Baldwin, J.J.Claremon, D.A.

(2011) Bioorg Med Chem Lett 21: 4836-4843

  • DOI: https://doi.org/10.1016/j.bmcl.2011.06.043
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 

    Structure-based design led to the discovery of a novel class of renin inhibitors in which an unprecedented phenyl ring filling the S1 site is attached to the phenyl ring filling the S3 pocket. Optimization for several parameters including potency in the presence of human plasma, selectivity against CYP3A4 inhibition and improved rat oral bioavailability led to the identification of 8d which demonstrated antihypertensive efficacy in a transgenic rat model of human hypertension.

  • Organizational Affiliation

    Vitae Pharmaceuticals, 502 West Office Center Drive, Fort Washington, PA 19034, USA. jyuan@vitaerx.com

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
A, B
340Homo sapiensMutation(s): 0 
Gene Names: RENrenin
UniProt & NIH Common Fund Data Resources
Find proteins for P00797 (Homo sapiens)
Explore P00797 
Go to UniProtKB:  P00797
PHAROS:  P00797
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00797
Sequence Annotations
  • Reference Sequence


Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Small Molecules
Binding Affinity Annotations 
IDSourceBinding Affinity
RX0 PDBBind:  3Q3T IC50: 37 (nM) from 1 assay(s)
BindingDB:  3Q3T IC50: 37 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Resolution: 2.60 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.204 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.253α = 90
b = 97.585β = 90
c = 148.651γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
CBASSdata collection
HKL-2000data reduction

Structure Validation

View Full Validation Report

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-08-03
    Type: Initial release
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Structure summary
  • Version 2.1: 2021-03-31
    Changes: Source and taxonomy, Structure summary
  • Version 2.2: 2023-09-13
    Changes: Data collection, Database references, Refinement description