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Alkyl Amine Renin Inhibitors: Filling S1 from S3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GW5 PDB ENTRY 3GW5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 HANGING DROP 278 0.1 M Tris-HCl, 0.2 M ammonium sulfate, 18-26% w/v PEG3550, 5 mg/mL renin, 1 mm inhibitor, pH 7.0-8.0, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.64 53.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.253 α = 90 b = 97.585 β = 90 c = 148.651 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4r 2004-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 46.359 99 0.073 12.2 3.9 24777
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 92 0.292 2.9 2258
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3GW5 2.6 46.359 24725 1263 98.93 0.2039 0.2004 0.2091 0.268 0.2655 RANDOM 31.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.22 3.9 -1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.34 r_dihedral_angle_3_deg 18.654 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_1_deg 7.479 r_scangle_it 3.578 r_scbond_it 2.106 r_angle_refined_deg 1.718 r_mcangle_it 1.482 r_mcbond_it 0.775 r_chiral_restr 0.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.34 r_dihedral_angle_3_deg 18.654 r_dihedral_angle_4_deg 15.941 r_dihedral_angle_1_deg 7.479 r_scangle_it 3.578 r_scbond_it 2.106 r_angle_refined_deg 1.718 r_mcangle_it 1.482 r_mcbond_it 0.775 r_chiral_restr 0.116 r_bond_refined_d 0.016 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5164 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 124
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction MOLREP phasing