3Q12

Pantoate-beta-alanine ligase from Yersinia pestis in complex with pantoate.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.150 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Pantoate-beta-alanine ligase from Yersinia pestis.

Osipiuk, J.Maltseva, N.Kwon, K.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Pantoate--beta-alanine ligase
A, B, C, D
287Yersinia pestisGene Names: panC
EC: 6.3.2.1
Find proteins for Q8ZBK7 (Yersinia pestis)
Go to UniProtKB:  Q8ZBK7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
PAF
Query on PAF

Download SDF File 
Download CCD File 
A, B, C, D
PANTOATE
2,4-DIHYDROXY-3,3-DIMETHYL-BUTYRATE
C6 H11 O4
OTOIIPJYVQJATP-BYPYZUCNSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 44.730α = 100.67
b = 77.054β = 95.33
c = 98.757γ = 94.43
Software Package:
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
HKL-3000phasing
MOLREPphasing
DENZOdata reduction
HKL-3000data scaling
PDB_EXTRACTdata extraction
SBC-Collectdata collection
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-02-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description