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Download EndnoteSerine hydroxymethyltransferase from Staphylococcus aureus, S95P mutant
Osipiuk, J., Makowska-Grzyska, M., Kwon, K., Anderson, W.F., Joachimiak, A.To be published.
3PGY
Serine hydroxymethyltransferase from Staphylococcus aureus, S95P mutant.
- DOI: 10.2210/pdb3PGY/pdb
- Classification: TRANSFERASE
- Organism(s): Staphylococcus aureus (strain COL)
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): 1
- Deposited: 2010-11-02 Released: 2010-11-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.92 Å
- R-Value Free: 0.208
- R-Value Work: 0.166
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Serine hydroxymethyltransferase | A, B, C, D | 415 | Staphylococcus aureus (strain COL) | Mutation(s): 1 Gene Names: glyA EC: 2.1.2.1 |
Find proteins for Q5HE87 (Staphylococcus aureus (strain COL)) Go to UniProtKB: Q5HE87 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GLY Query on GLY | A, B | GLYCINE C2 H5 N O2 DHMQDGOQFOQNFH-UHFFFAOYSA-N |  | Ligand Interaction | |
| CIT Query on CIT | A, B, C, D | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | C | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.92 Å
- R-Value Free: 0.208
- R-Value Work: 0.166
- Space Group: P 21 21 21
- Diffraction Data DOI:
10.18430/M33PGY Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 69.081 | α = 90.00 |
| b = 86.531 | β = 90.00 |
| c = 301.806 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data scaling |
| SCALEPACK | data scaling |
| HKL-3000 | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| SBC-Collect | data collection |
| MOLREP | phasing |
Entry History
Deposition Data
- Deposited Date: 2010-11-02
- Released Date: 2010-11-17
- Deposition Author(s): Osipiuk, J., Makowska-Grzyska, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History
- Version 1.0: 2010-11-17
Type: Initial release - Version 1.1: 2011-07-13
Type: Version format compliance - Version 1.2: 2017-11-08
Type: Refinement description
