Download MendeleySerine hydroxymethyltransferase from Staphylococcus aureus, S95P mutant
Osipiuk, J., Makowska-Grzyska, M., Kwon, K., Anderson, W.F., Joachimiak, A.To be published.
3PGY
Serine hydroxymethyltransferase from Staphylococcus aureus, S95P mutant.
- PDB DOI: 10.2210/pdb3PGY/pdb
- Classification: TRANSFERASE
- Organism(s): Staphylococcus aureus subsp. aureus COL
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2010-11-02 Released: 2010-11-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.92 Å
- R-Value Free: 0.208
- R-Value Work: 0.166
- R-Value Observed: 0.168
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Serine hydroxymethyltransferase | A, B, C, D | 415 | Staphylococcus aureus subsp. aureus COL | Mutation(s): 1 Gene Names: glyA, SACOL2105 EC: 2.1.2.1 |  |
UniProt | |||||
Find proteins for Q5HE87 (Staphylococcus aureus (strain COL)) Explore Q5HE87 Go to UniProtKB: Q5HE87 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5HE87 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | E [auth A], G [auth B], H [auth B], I [auth B], L [auth C], | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | Ligand Interaction | |
| GLY Query on GLY | F [auth A], J [auth B], K [auth B] | GLYCINE C2 H5 N O2 DHMQDGOQFOQNFH-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | M [auth C], N [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.92 Å
- R-Value Free: 0.208
- R-Value Work: 0.166
- R-Value Observed: 0.168
- Space Group: P 21 21 21
- Diffraction Data DOI: 10.18430/M33PGY Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.081 | α = 90 |
| b = 86.531 | β = 90 |
| c = 301.806 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MOLREP | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Deposited Date: 2010-11-02
- Released Date: 2010-11-17 Deposition Author(s): Osipiuk, J., Makowska-Grzyska, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2010-11-17
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description
