3OPC | pdb_00003opc

Crystal structure of FlgN chaperone from Bordetella pertussis

PDB DOI: https://doi.org/10.2210/pdb3OPC/pdb

Classification: CHAPERONE
Organism(s): Bordetella pertussis
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2010-08-31 Released: 2010-09-15
Deposition Author(s): Michalska, K., Chhor, G., Bearden, J., Fenske, R.J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.09 Å
R-Value Free:
0.256 (Depositor), 0.263 (DCC)
R-Value Work:
0.213 (Depositor), 0.217 (DCC)
R-Value Observed:
0.216 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of FlgN chaperone from Bordetella pertussis

Michalska, K., Chhor, G., Bearden, J., Fenske, R.J., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 32.45 kDa
Atom Count: 2,088
Modeled Residue Count: 259
Deposited Residue Count: 308
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B	154	Bordetella pertussis	Mutation(s): 0 Gene Names: BP1370, FlgN
UniProt
Find proteins for Q7VYH2 (Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)) Explore Q7VYH2 Go to UniProtKB: Q7VYH2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7VYH2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.09 Å
R-Value Free: 0.256 (Depositor), 0.263 (DCC)
R-Value Work: 0.213 (Depositor), 0.217 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.57	α = 90
b = 90.39	β = 90
c = 49.19	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
Auto-Rickshaw	phasing
SHELXD	phasing
ABS	model building
SHARP	phasing
DM	model building
HELICAP	model building
Coot	model building
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
ABS	phasing
DM	phasing
HELICAP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-09-15

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2010-09-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.