3OP0

Crystal structure of Cbl-c (Cbl-3) TKB domain in complex with EGFR pY1069 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.216 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of Cbl-c (Cbl-3) TKB domain in complex with EGFR pY1069 peptide

Chaikuad, A.Guo, K.Cooper, C.D.O.Ayinampudi, V.Krojer, T.Ugochukwu, E.Muniz, J.R.C.Vollmar, M.Canning, P.von Delft, F.Arrowsmith, C.H.Weigelt, J.Edwards, A.M.Bountra, C.Bullock, A.

To be published.

Macromolecules
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Epidermal growth factor receptorC, D11Homo sapiensMutation(s): 0 
Gene Names: EGFRERBBERBB1HER1
EC: 2.7.10.1
Find proteins for P00533 (Homo sapiens)
Explore P00533 
Go to UniProtKB:  P00533
NIH Common Fund Data Resources
PHAROS  P00533
Protein Feature View
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  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Signal transduction protein CBL-CA, B323Homo sapiensMutation(s): 1 
Gene Names: CBL3CBLCRNF57
EC: 2.3.2.27
Find proteins for Q9ULV8 (Homo sapiens)
Explore Q9ULV8 
Go to UniProtKB:  Q9ULV8
NIH Common Fund Data Resources
PHAROS  Q9ULV8
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NI
Query on NI

Download CCD File 
A, B
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  3 Unique
IDChainsTypeFormula2D DiagramParent
PTR
Query on PTR
C,DL-PEPTIDE LINKINGC9 H12 N O6 PTYR
CSD
Query on CSD
A,BL-PEPTIDE LINKINGC3 H7 N O4 SCYS
CSO
Query on CSO
A,BL-PEPTIDE LINKINGC3 H7 N O3 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.216 
  • Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 90.25α = 90
b = 90.25β = 90
c = 191.581γ = 120
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History 

  • Version 1.0: 2010-10-20
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-11-08
    Changes: Refinement description