3LW0

IGF-1RK in complex with ligand MSC1609119A-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.157 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Allosteric IGF-1R Inhibitors.

Heinrich, T.Gradler, U.Bottcher, H.Blaukat, A.Shutes, A.

(2010) ACS Med Chem Lett 1: 199-203

  • DOI: 10.1021/ml100044h
  • Primary Citation of Related Structures:  
    3LW0

  • PubMed Abstract: 
  • Targeting allosteric protein sites is a promising approach to interfere selectively with cellular signaling cascades. We have discovered a novel class of allosteric insulin-like growth factor-I receptor (IGF-1R) inhibitors. 3-Cyano-1H-indole-7-carbox ...

    Targeting allosteric protein sites is a promising approach to interfere selectively with cellular signaling cascades. We have discovered a novel class of allosteric insulin-like growth factor-I receptor (IGF-1R) inhibitors. 3-Cyano-1H-indole-7-carboxylic acid {1-[4-(5-cyano-1H-indol-3-yl)butyl]piperidin-4-yl}amide (10) was found with nanomolar biochemical, micromolar, cellular IGF-1R activity and no relevant interference with cellular insulin receptor signaling up to 30 μM. The allosteric binding site was characterized by X-ray crystallographic studies, and the structural information was used to explain the unique mode of action of this new class of inhibitors.


    Organizational Affiliation

    EMD Serono Research Institute, One Technology Place, Rockland, Massachusetts 02370.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Insulin-like growth factor 1 receptorABCD304Homo sapiensMutation(s): 2 
Gene Names: IGF1R
EC: 2.7.10.1
Find proteins for P08069 (Homo sapiens)
Explore P08069 
Go to UniProtKB:  P08069
NIH Common Fund Data Resources
PHAROS  P08069
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CCX
Query on CCX

Download CCD File 
A, B, C, D
3-cyano-N-{1-[4-(5-cyano-1H-indol-3-yl)butyl]piperidin-4-yl}-1H-indole-7-carboxamide
C28 H28 N6 O
GVZDPXYOJHKYRC-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download CCD File 
B, C
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
CCXIC50 :  400   nM  PDBBind
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.157 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 189.346α = 90
b = 189.346β = 90
c = 115.92γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-09-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2019-12-25
    Changes: Advisory, Database references