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IGF-1RK in complex with ligand MSC1609119A-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JQH PDB ENTRY 1JQH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 pH 0.0
Crystal Properties Matthews coefficient Solvent content 2.92 57.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 189.346 α = 90 b = 189.346 β = 90 c = 115.92 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 20 99.8 0.116 0.103 11.72 4.8 9614 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.79 1.87 99.5 0.526 0.468 4.2 4.7 9614
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1JQH 1.79 20 9614 4956 0.157 0.1693 0.185 0.1953 RANDOM 12.868
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.05 -0.11 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.258 r_dihedral_angle_4_deg 14.579 r_dihedral_angle_3_deg 12.439 r_dihedral_angle_1_deg 5.704 r_scangle_it 4.482 r_scbond_it 3.151 r_mcangle_it 1.909 r_mcbond_it 1.77 r_angle_refined_deg 1.23 r_angle_other_deg 1.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.258 r_dihedral_angle_4_deg 14.579 r_dihedral_angle_3_deg 12.439 r_dihedral_angle_1_deg 5.704 r_scangle_it 4.482 r_scbond_it 3.151 r_mcangle_it 1.909 r_mcbond_it 1.77 r_angle_refined_deg 1.23 r_angle_other_deg 1.205 r_mcbond_other 0.24 r_nbd_refined 0.205 r_symmetry_vdw_other 0.199 r_nbd_other 0.186 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.135 r_symmetry_hbond_refined 0.121 r_chiral_restr 0.079 r_symmetry_vdw_refined 0.075 r_nbtor_other 0.071 r_xyhbond_nbd_other 0.047 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9368 Nucleic Acid Atoms Solvent Atoms 1049 Heterogen Atoms 292
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling