3KF2

The HCV NS3/NS4A protease apo structure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Induced-Fit Binding of the Macrocyclic Noncovalent Inhibitor TMC435 to its HCV NS3/NS4A Protease Target

Cummings, M.D.Lindberg, J.D.Lin, T.-I.de Kock, H.Lenz, O.Lilja, E.Fellander, S.Baraznenok, V.Nystrom, S.Nilsson, M.Vrang, L.Edlund, M.Rosenquist, A.Samuelsson, B.Raboisson, P.Simmen, K.

(2010) Angew.Chem.Int.Ed.Engl. 49: 1652-1655


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polyprotein
A, B
200Hepacivirus CMutation(s): 1 
Gene Names: pol
Find proteins for B2Y2M9 (Hepacivirus C)
Go to UniProtKB:  B2Y2M9
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
19-mer peptide from Genome polyprotein
C, D
23Hepacivirus CMutation(s): 0 
Find proteins for Q6GYR8 (Hepacivirus C)
Go to UniProtKB:  Q6GYR8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.205 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 224.924α = 90.00
b = 224.924β = 90.00
c = 75.545γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
DNAdata collection
PHASERphasing
MOSFLMdata reduction
PDB_EXTRACTdata extraction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-03-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance